Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3373g00021 ATGGCTACCTTGTCAATTTCTTTCTTATTTTCCATGGTACTCTTGCTTCCTCACTCAACAAGAAGCACAACTCCAGTTTGCGACAAGAGATATTGCGGAAGCCCTGATCGGGAACTTCCTATTGAGTTCCCTTTCCAATTAATAGAAGGCAATAATCAAAGCAATCGATGTGGGTACCCAGGGTTTGATGTTTTGTGTAATGATAGGAAGCAGAAATTGCTTAAACTCTCACAGGAAATAGGAGAATTCGTTGTCAACTACATATCCCTTGAGAAGCAAAGAATTTGGATTAACGACCCCGATGCGTGTCTCCCTAGAAGGTTAATGCAAAACATGGACCTCAATGATTCACCTTTCCGATGGGACAAGGACAGTTATGATAATTTTGAAAAATTAACCACTCTCAACTGCACGAAATTAGCAGCGAAGTTAATAGTTGAGGGGATATTATATCCTATACCCTGCCTAAGCAATAACAATTATTCGATCACGTATGCGTTGAACTCGTCTCTGGATTCGTGGAAATCATCGTGCAATGAGATTGGCTTTGCATTGGTTCCAGTTAAAGATCATTCCAAAGATTCATCCATAATCGAGGAGGGACTTTACTCTGATATCATGTTGCAATGGAATACACCTCTGTGTGAATGTGAAGCAGACCAACGTTGTGGCTTTTTAACGGATACGGGTCTTACCGTTACTTGTTACAACTTTACTAGCCCGGGTGGAAGTCCCCCAATTTCTCGCCCTGGGCCTAGGAGAGTCATTTTCTTTCTAGTCTGGGGAATAACTGGATTCCTGTTCTTCTTCTATTGGATAGTTTTATCTGTGTTTAGAAGGAGGAGGCATAGCCAGCAACGATGGACAAACATAGAATCAAATATCCGGGAACCCCCTGGGGTAGTGGTGGTGCTTGATGGATCAAGGATAGAACAATATCCAAAGTTCCAACTAAATGAAAGTGGACAATTTAACGACTCATCCATCGACAAAGTATGTTCAATATGTCTTGGTGAGTACAAGCCCATGGAGACATTAAGGAGCATGCCCCAGTGCAATCACTATTTTCATGTCCATTGTATAGATGCTTGGCTCAAGATGAATGCTACCTGCCCCTTATGCCGAAATGAGCCAGAGGGATCTGTTTTGGTTACCTCTTCCTTGCCTCCTTCTACAGCTTCACATGAATCACCAGCATAA 1200 0.4225 MATLSISFLFSMVLLLPHSTRSTTPVCDKRYCGSPDRELPIEFPFQLIEGNNQSNRCGYPGFDVLCNDRKQKLLKLSQEIGEFVVNYISLEKQRIWINDPDACLPRRLMQNMDLNDSPFRWDKDSYDNFEKLTTLNCTKLAAKLIVEGILYPIPCLSNNNYSITYALNSSLDSWKSSCNEIGFALVPVKDHSKDSSIIEEGLYSDIMLQWNTPLCECEADQRCGFLTDTGLTVTCYNFTSPGGSPPISRPGPRRVIFFLVWGITGFLFFFYWIVLSVFRRRRHSQQRWTNIESNIREPPGVVVVLDGSRIEQYPKFQLNESGQFNDSSIDKVCSICLGEYKPMETLRSMPQCNHYFHVHCIDAWLKMNATCPLCRNEPEGSVLVTSSLPPSTASHESPA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3373g00021 399 SMART ring_2 333 374 IPR001841 -
Gabi3373g00021 399 ProSiteProfiles Zinc finger RING-type profile. 333 375 IPR001841 -
Gabi3373g00021 399 SUPERFAMILY RING/U-box 322 377 - -
Gabi3373g00021 399 Pfam Wall-associated receptor kinase galacturonan-binding 27 99 IPR025287 GO:0030247
Gabi3373g00021 399 Pfam Ring finger domain 332 375 IPR001841 -
Gabi3373g00021 399 CDD RING-H2_EL5-like 333 375 - -
Gabi3373g00021 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 380 IPR013083 -
Gabi3373g00021 399 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 378 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3373g00021 Gabi-Chr3373 243389 246543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3373g00021 43 378 C3H Transcription Factor Family AT2G25410 34.104 4.76e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3373g00021 - - psat:127123903 392.119