Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3373g00012 ATGGAGGGAATGCAAGATGGTGCTGATATTGGATCCTCTTTATCAAAGCTCATACTATCAAGTGGGACAAACACCTTGGACTCAATTTTCTCTCATTATCCACCAACGAATGGCACTACTACTAACACAAACCCTGTGTCTGATTACTTGGAGCCATTTGGGTCTTTGGGGTTTGAGCCTTTGGGATCCTCTGTGTACCTCCGCCAAAGAGACATCTTGCAAAAATTCTACCACGAAAGCCGAGGGAATGGGTCTTTTGTTCCCTCTTCCTTGGCAAATCCATCTCTGAGCTCTGCATACGCGAGTTCTTTCATGAATCCTTGCAAGAAAAATCTGTACAGGGGAGTGAGACAGAGGCACTGGGGGAAATGGGTCGCTGAGATTAGACTCCCTCAGAATAGAATGAGAGTCTGGTTGGGCACTTATGACACTGCCGAAGCTGCTGCTTATGCCTATGATCGTGCAGCTTATAAGCTCCGTGGAGAATATGCACGTTTGAATTTCCCAAATCTAAAGGACCCAAGCAAGTTAGGATTCGGAGATTCCGCGAGATTGAATGCTCTGAAGAGCTCCGTGGATGCCAAAATTCAAGCTATATGTCAAAAGGTGAAGAAAAGAGAGAAAGCCAAAAAGAATGCTGCAAAGAAGCTTAATTCAGGTAATGACAAAAACCGCGGACAGGGTGAGAAATCACACAAGATTAACTCATCTTCCTGTTCTTCTTCCTCGCTAATGTTGTCACCGTCAAATTCAAATTTTTGTGATAATTGGGCGAACGATTTGTTTTCACCAACTGTTTCGGAGGATGAAATTTGGAAAGGGGAGAACTCCCCGGCCTCTGTTTTGACAGAATGTCCAACAATGGTAACAGAGGAATCAGAGTTCGATGAATGTTCCTTGGCAAGGATGCCATCCTTCGATCCCGAGTTGATTTGGGATGTTCTGGCCATTTAG 954 0.4465 MEGMQDGADIGSSLSKLILSSGTNTLDSIFSHYPPTNGTTTNTNPVSDYLEPFGSLGFEPLGSSVYLRQRDILQKFYHESRGNGSFVPSSLANPSLSSAYASSFMNPCKKNLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSKLGFGDSARLNALKSSVDAKIQAICQKVKKREKAKKNAAKKLNSGNDKNRGQGEKSHKINSSSCSSSSLMLSPSNSNFCDNWANDLFSPTVSEDEIWKGENSPASVLTECPTMVTEESEFDECSLARMPSFDPELIWDVLAI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3373g00012 317 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Gabi3373g00012 317 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Gabi3373g00012 317 Gene3D AP2/ERF domain 112 170 IPR036955 GO:0003700|GO:0006355
Gabi3373g00012 317 FunFam Ethylene-responsive transcription factor 2 111 170 - -
Gabi3373g00012 317 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 23 315 - -
Gabi3373g00012 317 MobiDBLite consensus disorder prediction 213 230 - -
Gabi3373g00012 317 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Gabi3373g00012 317 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Gabi3373g00012 317 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Gabi3373g00012 317 CDD AP2 113 171 IPR001471 GO:0003700|GO:0006355
Gabi3373g00012 317 MobiDBLite consensus disorder prediction 207 242 - -
Gabi3373g00012 317 SUPERFAMILY DNA-binding domain 112 169 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3373g00012 Gabi-Chr3373 126210 127817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3373g00012 8 316 AP2-EREBP Transcription Factor Family AT1G64380 47.863 5.31e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3373g00012 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3373g00012 - - gmx:100785364 407.527