Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3373g00010 ATGGAAAATAACAGGAGTTGGGAACAGAACGCACTCTTCAATGAGCTATTTCAGGGGATGGAGATTGCAAGAAAGTTGAAGGAAGACTTGACTTTACCCTCTTCGGCTGACACTAGGGACTTGCTTGTGCAGAGGATATTATCTTCTTATGACAAGGCTTTACTAATTCTAAGATGGAATGCATCAATTTCCAAGTCACAGACCATGCATCAAGCAACTAAAACTTTGTCACCAGAGTCCCCAGTATCTGCCAAAAGAAGTCCTCCAATGGAGGACATTGATGGGGGCCTAATGGACCATCAGGAGCTTAAACACGATTCAAAGAAAAGAAAGACGATGCCCAAATGGAAGGATCAGATTAGAGTGAAGTTCGAGAATGGCTTTGAATGGCCCCACGAAGATGGATTCAACTGGAGAAAATATGGACAGAAAGACATCCTTGGTGCCAAATATCCCAGGTACGAGGATATTTTCCTTTTCCCTATCCCTATGGTGCTTAATAAAATAAACACAACAATTGAGATGAAATTAACAATTGATTGTTACATATGCAGAAGCTATTATAGGTGCACCTTCCGCAACACTAAGGGCTGCTGGGCCACGAAGCAAGTGCAGAGAACAGATGAAGACCCCACTATCTTTGACATCACTTACCGAGGAAGCCACACCTGTTCTCAGGGAACCAATGCGGTTCTGCCACCAAAGTCACCAGACATACAAGAGAAACCGCATGGTCATAAAAACGATGTTTGCCATGCGCAGCCATCACAAGAAAGCCTTACAAAGTTCAGAAACACCTTGACTGTTAATACGGTTAACCTGGGAAATGAAGAAACGGCACAACATTTCACTTCCACTTCGAATTCATTTGGATGCTTGACACAAGATAACCACACCTTATTTCCTTCGGTACTAGAGAATGATCCCTTCTTGAGCAGCCTTTCACAAACACACTTGTCTCCAAACACGCCAGAATCAAATTATTTTCTAACTCCGTCTTTCCTCATAGATGAGTTTGATGGGATCTGTAACAAGCCATGCCCAGATTCTGATATTACTGAGATCGTTACCGCCAACACATCAGCCACCAATTATTCAATTTTCGATTTCAATTTCTCACTCGATGTACCGGAAATTGATCCAGATTTCCCTTTCAATGCCTCGGGATTTTTCTCCTAA 1179 0.4249 MENNRSWEQNALFNELFQGMEIARKLKEDLTLPSSADTRDLLVQRILSSYDKALLILRWNASISKSQTMHQATKTLSPESPVSAKRSPPMEDIDGGLMDHQELKHDSKKRKTMPKWKDQIRVKFENGFEWPHEDGFNWRKYGQKDILGAKYPRYEDIFLFPIPMVLNKINTTIEMKLTIDCYICRSYYRCTFRNTKGCWATKQVQRTDEDPTIFDITYRGSHTCSQGTNAVLPPKSPDIQEKPHGHKNDVCHAQPSQESLTKFRNTLTVNTVNLGNEETAQHFTSTSNSFGCLTQDNHTLFPSVLENDPFLSSLSQTHLSPNTPESNYFLTPSFLIDEFDGICNKPCPDSDITEIVTANTSATNYSIFDFNFSLDVPEIDPDFPFNASGFFS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3373g00010 392 SMART WRKY_cls 132 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3373g00010 392 ProSiteProfiles WRKY domain profile. 133 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3373g00010 392 Pfam WRKY DNA -binding domain 133 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3373g00010 392 Pfam WRKY DNA -binding domain 184 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3373g00010 392 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 299 IPR044810 GO:0003700
Gabi3373g00010 392 SUPERFAMILY WRKY DNA-binding domain 177 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3373g00010 392 SUPERFAMILY WRKY DNA-binding domain 131 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3373g00010 392 Gene3D WRKY domain 119 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3373g00010 Gabi-Chr3373 89624 91159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3373g00010 7 384 WRKY Transcription Factor Family AT4G11070 31.662 7.24e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3373g00010 WRKY 7e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3373g00010 - - gmx:100815760 478.018