Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3372g00036 ATGCCAAGGGGAAAGAGAAATTCTTCATCAGTTGCTAAGCCATCTGAGCCTGAAAAGGCAGTTGAATCTGATGAGAAGGTCGATTTCGATGAGGAAAATGATCCCGAGGAAGCAATGGAAGAAGAAATTGAATATGAAGAAGTAGAGGAAGAAGAGGAAGTGGAAGAAATAGAAGAGGAGGTGGAAGAGGTGGAAGAAGAGGAGGAGGAGGACCCAGAGGAGGTAGAGGTAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGATGAGGAGGAAGTTGAAGAAGTGGAAGAAGATGATGCCATGCAAAACCGTAGCAGTGATGAGACCATGGTGGAAGATGAGGATGAGAAGAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCATGGATCTGAAGTATACATTGGTGGCATTCCTCATGATGCCTCAAATGAGGATTTGAAAGCTTTTTGTGAACGTATTGGAGAAGTTACGGAGGTTCGAGTAATGAAAGCAAAAGATTCTTCTGAGAATAAGGGATTTGGTTTTGTGACTTTTAGAAACGTTGAATTGGCTTCAAAAGCCATTGAGGAGCTGAATAATACAGAATTTAAGGGTAAAAAAATAAAATGTTCAACATCTCAAGCAAAACACCGTCTTTTTATTGGCAATGTTCCCAGAAGCTGGGGTGAGGAAGATCTGAGGAAGATTGTAACTGAGATTGGACCTGGAGTTACTGCTGTAGAACTGGTCAAGGATATGAAGAATATAAACAATAACCGTGGATTTGCTTTTGTCGACTATTATAATCATGGATGTGCTGAATATTCAAGGCAAAAGATGACGAGCCCAACATTTAAGCTAGGTGACAATGCTCCAACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTTCATCTCAGGTGAAGGCAGTATATGTGAAGAACCTTCCTAAGAATGTCACTCAAGAGCAGTTGAAGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGACAGGAAAAGAACAGAATTGGTTTTGTACATTTTTCAGATAGGTCAAATGCTATGAAAGCACTAAAAAACACTGAAAGATATGAATTAGAAGGTCAAATTTTAGAGTGCTCTCTAGCAAAACCACAGGCTGATCAAAAGTCTGGAGGATCAAATACACAGAAGCCAGGATTGCTTTCAAGCTATCCTCCACGTGCTGGTTATGGTTTGGTTGGGGGTCCTTATGGTGCACTTGGTGCGGGATATGGTGCTCCAGGTCTTGCACAGCCCTTGATATATGGAACGGGTCAAACTCCAGCTGGAATGGCCATGATGCCTATGCTTCTGGCTGATGGACGGATTGGATATGTCTTGCAACAACCAGGAATGCAGCCACAAATTCCATCCTCACATCAGAGAGGTGGCAGAAGTGGTGGTGGCGGGAGCAATAGCAGGAATTCTGGCAGTTCAGGTAAGGGAAGGCACAACAATGATAGTGGCCAAGGGCGCAGATACCGCCCATATTAG 1536 0.4382 MPRGKRNSSSVAKPSEPEKAVESDEKVDFDEENDPEEAMEEEIEYEEVEEEEEVEEIEEEVEEVEEEEEEDPEEVEVEEEEEEEEEEEEDEEEVEEVEEDDAMQNRSSDETMVEDEDEKKKHAELLSLPPHGSEVYIGGIPHDASNEDLKAFCERIGEVTEVRVMKAKDSSENKGFGFVTFRNVELASKAIEELNNTEFKGKKIKCSTSQAKHRLFIGNVPRSWGEEDLRKIVTEIGPGVTAVELVKDMKNINNNRGFAFVDYYNHGCAEYSRQKMTSPTFKLGDNAPTVSWADPKNADSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPAKSGQEKNRIGFVHFSDRSNAMKALKNTERYELEGQILECSLAKPQADQKSGGSNTQKPGLLSSYPPRAGYGLVGGPYGALGAGYGAPGLAQPLIYGTGQTPAGMAMMPMLLADGRIGYVLQQPGMQPQIPSSHQRGGRSGGGGSNSRNSGSSGKGRHNNDSGQGRRYRPY 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3372g00036 511 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 296 406 - -
Gabi3372g00036 511 Gene3D - 295 419 IPR012677 -
Gabi3372g00036 511 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 503 - -
Gabi3372g00036 511 Gene3D - 65 213 IPR012677 -
Gabi3372g00036 511 MobiDBLite consensus disorder prediction 465 499 - -
Gabi3372g00036 511 MobiDBLite consensus disorder prediction 384 403 - -
Gabi3372g00036 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 295 IPR000504 GO:0003723
Gabi3372g00036 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 385 IPR000504 GO:0003723
Gabi3372g00036 511 MobiDBLite consensus disorder prediction 27 103 - -
Gabi3372g00036 511 MobiDBLite consensus disorder prediction 1 120 - -
Gabi3372g00036 511 SUPERFAMILY RNA-binding domain, RBD 302 407 IPR035979 GO:0003676
Gabi3372g00036 511 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 214 294 - -
Gabi3372g00036 511 Gene3D - 214 294 IPR012677 -
Gabi3372g00036 511 SUPERFAMILY RNA-binding domain, RBD 130 299 IPR035979 GO:0003676
Gabi3372g00036 511 SMART rrm2_1 308 381 IPR003954 GO:0003676
Gabi3372g00036 511 SMART rrm2_1 134 207 IPR003954 GO:0003676
Gabi3372g00036 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 211 IPR000504 GO:0003723
Gabi3372g00036 511 MobiDBLite consensus disorder prediction 387 402 - -
Gabi3372g00036 511 Coils Coil 38 100 - -
Gabi3372g00036 511 SMART rrm1_1 134 207 IPR000504 GO:0003723
Gabi3372g00036 511 SMART rrm1_1 308 381 IPR000504 GO:0003723
Gabi3372g00036 511 SMART rrm1_1 214 291 IPR000504 GO:0003723
Gabi3372g00036 511 MobiDBLite consensus disorder prediction 104 120 - -
Gabi3372g00036 511 MobiDBLite consensus disorder prediction 464 511 - -
Gabi3372g00036 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 278 IPR000504 GO:0003723
Gabi3372g00036 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 376 IPR000504 GO:0003723
Gabi3372g00036 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 205 IPR000504 GO:0003723
Gabi3372g00036 511 CDD RRM_SF 135 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3372g00036 Gabi-Chr3372 316108 322326 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3372g00036 140 468 Eukaryotic Initiation Factors Gene Family AT4G34110 27.174 8.88e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3372g00036 K13161 - gmx:100785076 684.1