LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3372g00033	ATGTCAGAGGCGGAGGAATTGCCCAGGACTATCGTGCGCCGCGTGGTGAAGGATAAGCTCTCCCGTTTCTCCGACGACGGAGACATTTCCGTCCACAAAGACGCTCTTCTCGCATTCTCCGAAAGCGCTAGGATCTTCATACACTACCTTTCTGCAACGGCTAATGACATATGTAAGGAATCAAAGAGGCAGATTATCAATGCTGAAGATGTTTTCAAAGCTCTTGAAGAAACTGAGTTCTCTGAGTTTGTTCGTCCTCTAAAAGCTTCTCTTGAAGAGTTCAGGAAGAAGAATGCTGGGAAGAAAGCGGCAGTGTCAAAGGGAAAGGGAAATGAGACGAAAAAGAAAAGAAAGTTGGAAGATGAATCATCTGATAAAGGAGAGGGTGGTGACAGTCAATGA	402	0.4552	MSEAEELPRTIVRRVVKDKLSRFSDDGDISVHKDALLAFSESARIFIHYLSATANDICKESKRQIINAEDVFKALEETEFSEFVRPLKASLEEFRKKNAGKKAAVSKGKGNETKKKRKLEDESSDKGEGGDSQ	133

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3372g00033	133	FunFam	DNA polymerase epsilon subunit 3	1	133	-	-
	Gabi3372g00033	133	MobiDBLite	consensus disorder prediction	107	133	-	-
	Gabi3372g00033	133	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	6	75	IPR003958	-
	Gabi3372g00033	133	PANTHER	DNA POLYMERASE EPSILON SUBUNIT 3	4	128	-	-
	Gabi3372g00033	133	Gene3D	Histone, subunit A	1	133	IPR009072	GO:0046982
	Gabi3372g00033	133	Coils	Coil	58	78	-	-
	Gabi3372g00033	133	MobiDBLite	consensus disorder prediction	98	133	-	-
	Gabi3372g00033	133	SUPERFAMILY	Histone-fold	7	122	IPR009072	GO:0046982

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3372g00033	7	117	CCAAT-HAP3 Transcription Factor Family	AT3G53340	31.532	2.82e-11	56.2

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YB	Gabi3372g00033		CBFD_NFYB_HMF	1e-08	CL0012

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3372g00033	K02326		-	gmx:100306382	204.142

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