Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3372g00030 ATGTACCATCATCATCAACACCAAGGAAAGAACATTCATTCTTCTTCAAGAATGTCAATCCCTTCTGAGAGGCATATGTTCCTTCAAACCGGAAGTGGGTCTGGTGATTCTGGACTTGTTCTGTCAACTGATGCTAAGCCTAGATTGAAATGGACACCAGATCTTCATGCCAGGTTTATTGAAGCAGTGCATCAGTTAGGTGGAGCTGACAAGGCAACTCCAAAAACAGTGATGAAACTCATGGGAATTCCAGGGCTTACCTTATATCATCTAAAAAGTCATCTTCAGAAGTACAGATTGAGCAAGAATATGCATGGACAAAGTAACAATGTGACACACAAAATCAATCCAGGTCCAGCAACAGGAGAAAGACTCTCTGAAAATAATGGAACTCATATGAACAATTTAAACCTTGGCTCTCAGTCTAACAAAGATTTACACATAAATGAGGCACTGCAGATGCAGATAGAGGTGCAGAGAAGGCTAAATGAACAACTTGAGGTGCAAAGACTCTTACAGCTCCGGATAGAGGCCCAAGGAAAATACCTGCAAGCTGTGTTAGAGAAAGCTCAGGAAACACTTGGTAGACAGAACTTGGGAATAGTAGGACTTGAAACTGCTAAAGTTCAACTTTCAGAGCTTGTGTCCAAAGTATCCTCTCAGTGCCTGAATTCAGCATTTTCAGAACTGAAGGAATTACAAGGGTTTAGTCCACAACAAACACAAAACAACCAGCCTAATGACTACTCCATGGACAATTGCCTCACATCCCGTGAGGGATCAGAAAATGAGCAAGAAATGCAAAATGGGGGGATGAGCTTAAGACCCTTCAATGGTCATACATTCATGGAAACAAAGGAAGTCATAGAGGCTCATAATCCCAACCTACGGAACTCTGAGATCAAATGGTGTGATCAAGGGAAAAAGAACACTTTTCTTACCCCATTAGGCAAGAATTCAGAAAGAAGAAGTTATGTTGTAGAAAGAAGTCCCAGCAACTTATCTATGAGCATTGGGGTTGAAGGAGAAACAGATGGTGAATTCCAACAGCTAAGCACCATTAGGAAAGAATCAATGAAACCAGGGACTGATAAAGTTTCTCAAGATTATAGATTGCCTTCTTACTTTTCAACAAGACTGGACCTATCCACTGAAGATAATGACGCTGAAACGAGTTGTAAACAACTTGACTTGAATAGATTCAGTTGGAACTGA 1215 0.4082 MYHHHQHQGKNIHSSSRMSIPSERHMFLQTGSGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVHQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNMHGQSNNVTHKINPGPATGERLSENNGTHMNNLNLGSQSNKDLHINEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGIVGLETAKVQLSELVSKVSSQCLNSAFSELKELQGFSPQQTQNNQPNDYSMDNCLTSREGSENEQEMQNGGMSLRPFNGHTFMETKEVIEAHNPNLRNSEIKWCDQGKKNTFLTPLGKNSERRSYVVERSPSNLSMSIGVEGETDGEFQQLSTIRKESMKPGTDKVSQDYRLPSYFSTRLDLSTEDNDAETSCKQLDLNRFSWN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3372g00030 404 Pfam MYB-CC type transfactor, LHEQLE motif 147 193 IPR025756 -
Gabi3372g00030 404 Coils Coil 149 169 - -
Gabi3372g00030 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Gabi3372g00030 404 FunFam Myb family transcription factor 45 103 - -
Gabi3372g00030 404 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 271 IPR044848 GO:0003700
Gabi3372g00030 404 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Gabi3372g00030 404 Gene3D - 45 103 - -
Gabi3372g00030 404 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Gabi3372g00030 404 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3372g00030 Gabi-Chr3372 290031 292619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3372g00030 78 404 G2-like Transcription Factor Family AT3G04030 49.851 2.19e-94 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi3372g00030 Myb_DNA-binding 1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3372g00030 - - gmx:100810396 603.979