Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3372g00029 ATGTACCATCATCATCAACACCAAGGAAAGAACATTCATTCTTCTTCAAGAATGTCAATCCCTTCTGAGAGGCATATGTTCCTTCAAACCGGAAGTGGGTCTGGTGATTCTGGACTTGTTCTGTCAACTGATGCTAAGCCTAGATTGAAATGGACACCAGATCTTCATGCCAGGTTTATTGAAGCAGTGCATCAGTTAGGTGGAGCTGACAAGGCAACTCCAAAAACAGTGATGAAACTCATGGGAATTCCAGGGCTTACCTTATATCATCTAAAAAGTCATCTTCAGAAGTACAGATTGAGCAAGAATATGCATGGACAAAGTAACAATGTGACACACAAAATCACCACAGATCCAGGTCCAGCAACAGGAGAAAGACTCTCTGAAAATAATGGAACTCATATGAACAATTTAAACCTTGGCTCTCAGTCTAACAAAGATTTACACATAAATGAGGCACTGCAGATGCAGATAGAGGTGCAGAGAAGGCTAAATGAACAACTTGAGGTGCAAAGACTCTTACAGCTCCGGATAGAGGCCCAAGGAAAATACCTGCAAGCTGTGTTAGAGAAAGCTCAGGAAACACTTGGTAGACAGAACTTGGGAATAGTAGGACTTGAAACTGCTAAAGTTCAACTTTCAGAGCTTGTGTCCAAAGTATCCTCTCAGTGCCTGAATTCAGCATTTTCAGAACTGAAGGAATTACAAGGGTTTAGTCCACAACAAACACAAAACAACCAGCCTAATGACTACTCCATGGACAATTGCCTCACATCCCGTGAGGGATCAGAAAATGAGCAAGAAATGCAAAATGGGGGGATGAGCTTAAGACCCTTCAATGGTCATACATTCATGGAAACAAAGGAAGTCATAGAGGCTCATAATCCCAACCTACGGAACTCTGAGATCAAATGGTGTGATCAAGGGAAAAAGAACACTTTTCTTACCCCATTAGGCAAGAATTCAGAAAGAAGAAGTTATGTTGTAGAAAGAAGTCCCAGCAACTTATCTATGAGCATTGGGGTTGAAGGAGAAACAGATGGTGAATTCCAACAGCTAAGCACCATTAGGAAAGAATCAATGAAACCAGGGACTGATAAAGTTTCTCAAGATTATAGATTGCCTTCTTACTTTTCAACAAGACTGGACCTATCCACTGAAGATAATGACGCTGAAACGAGTTGTAAACAACTTGACTTGAATAGATTCAGTTGGAACTGA 1221 0.4095 MYHHHQHQGKNIHSSSRMSIPSERHMFLQTGSGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVHQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNMHGQSNNVTHKITTDPGPATGERLSENNGTHMNNLNLGSQSNKDLHINEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGIVGLETAKVQLSELVSKVSSQCLNSAFSELKELQGFSPQQTQNNQPNDYSMDNCLTSREGSENEQEMQNGGMSLRPFNGHTFMETKEVIEAHNPNLRNSEIKWCDQGKKNTFLTPLGKNSERRSYVVERSPSNLSMSIGVEGETDGEFQQLSTIRKESMKPGTDKVSQDYRLPSYFSTRLDLSTEDNDAETSCKQLDLNRFSWN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3372g00029 406 Pfam MYB-CC type transfactor, LHEQLE motif 149 195 IPR025756 -
Gabi3372g00029 406 Coils Coil 151 171 - -
Gabi3372g00029 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Gabi3372g00029 406 FunFam Myb family transcription factor 45 103 - -
Gabi3372g00029 406 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Gabi3372g00029 406 Gene3D - 45 103 - -
Gabi3372g00029 406 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Gabi3372g00029 406 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 272 IPR044848 GO:0003700
Gabi3372g00029 406 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3372g00029 Gabi-Chr3372 290031 292619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3372g00029 78 406 G2-like Transcription Factor Family AT3G04030 49.853 1.23e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi3372g00029 Myb_DNA-binding 1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3372g00029 - - gmx:100810396 603.208