Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3372g00020 ATGGCGAGCCAAAGAATAGGAGAAACGGATTTGTCTGAGTCACGGCCTTCAAGTCATCATGTCCCTTATGGAGTTCTTCATGGGATTAATACCCCACCATCAAGCTTAATGAACCAAGGATCTGCTTTTGATTTTGGAGAGCTGGAAGAGGCAATTGTTCTACAAGGAATAAAGATAAGAAATGATGAAGCCAAAGCATGCAAGCCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATATCAGCAAACTCCAAGAGGAGGTTCTAATTCAGGAGGGGAAAGCTCTGATTCAGGATCAGGAATGAACACTCTATCAAGCAAAATGGAGCTCCAATTTGAAACAGAATCTCCCATGAATAAAAAGGCATCTTCTTCAGATAATCATGCTTTTGATCAGCAGCAACAACTGCTTCTTCAACAGCAACAGCAACACCAGTTTCATCAGGAGACTATAATTGATGCCTCAAGAACAGGACTATCACAGAATCAATCAGCTGCCAAATCACCACAGGAAAAGAGGAAGGGAACTGGTTCTGGTTCCACATCAGAGAAGCCACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAATCAAGTAGATTAAAGCTCACCCACCTAGAACAAGATCTTCAAAGAGCACGCTCTCAGGGACTGTTGGGTTGTGGTGGTGCTGGTGGAAATATGAGCTCAGGAGCTGCAATGTTTGACATGGAGTATGCAAGGTGGTTAGAAGATGACCACCGGCACATGGCGGAGCTCCGGACGGGGCTGCAGGCGCCGCTATCGGACAGTGAACTGAGAGTGATGGTGGACGGATATCTGACTCATTATGATGAGGTTTTCCGGCTGAAGGAGGTGGCTGCTAGATCAGATGTGTTTCACCTTATTAATGGCATGTGGACTTCACCAGCTGAGCGATGCTTCCTATGGATTGCTGGTTTTAGACCCTCAGAGCTCATCACAATGTTGGTACAACAATTGGAGCCTTTAGCGGAGCAGCAAATAATGGGTATATATGGGCTCAGGCACTCATCACAGCAAGCAGAAGAGGCTCTATCTCAAGGCCTTGAACAGCTCCACCACTCTCTGGTTGAAACCATCGCCGGCGGTCCCGTCGTTGACGGTGTCCAACAGATGGTCCTCGCCATGAGCAAGCTTGCCAACCTTGAAGGATTCGTCCGTCAGGCTGATAATTTGAGGCAGCAAACTCTTCACCAATTATGTCGATTACTTACAATTCGTCAAGCAGCACGATGTTTCCTTGTGATTGGAGAGTATCATGGCCGTCTTCGAGCCCTTAGTTCTCTTTGGGCATCAAGACCAAGAGAGACCTTCATCAGTGATGATAACTCATGCCAAACAACCACGGAATTGCAAATGGTTCATCCTTCACAGAATCATTTCTCAAGTTTCTGA 1482 0.4636 MASQRIGETDLSESRPSSHHVPYGVLHGINTPPSSLMNQGSAFDFGELEEAIVLQGIKIRNDEAKACKPAATLEMFPSWPMRYQQTPRGGSNSGGESSDSGSGMNTLSSKMELQFETESPMNKKASSSDNHAFDQQQQLLLQQQQQHQFHQETIIDASRTGLSQNQSAAKSPQEKRKGTGSGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDLQRARSQGLLGCGGAGGNMSSGAAMFDMEYARWLEDDHRHMAELRTGLQAPLSDSELRVMVDGYLTHYDEVFRLKEVAARSDVFHLINGMWTSPAERCFLWIAGFRPSELITMLVQQLEPLAEQQIMGIYGLRHSSQQAEEALSQGLEQLHHSLVETIAGGPVVDGVQQMVLAMSKLANLEGFVRQADNLRQQTLHQLCRLLTIRQAARCFLVIGEYHGRLRALSSLWASRPRETFISDDNSCQTTTELQMVHPSQNHFSSF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3372g00020 493 SUPERFAMILY Leucine zipper domain 192 234 IPR046347 GO:0003700|GO:0006355
Gabi3372g00020 493 ProSiteProfiles DOG1 domain profile. 254 462 IPR025422 GO:0006351|GO:0043565
Gabi3372g00020 493 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3372g00020 493 Pfam bZIP transcription factor 191 233 IPR004827 GO:0003700|GO:0006355
Gabi3372g00020 493 Coils Coil 218 238 - -
Gabi3372g00020 493 MobiDBLite consensus disorder prediction 160 193 - -
Gabi3372g00020 493 MobiDBLite consensus disorder prediction 160 188 - -
Gabi3372g00020 493 Gene3D - 191 240 - -
Gabi3372g00020 493 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 190 234 IPR004827 GO:0003700|GO:0006355
Gabi3372g00020 493 PANTHER TRANSCRIPTION FACTOR TGA9 112 465 - -
Gabi3372g00020 493 MobiDBLite consensus disorder prediction 84 106 - -
Gabi3372g00020 493 SMART brlzneu 188 263 IPR004827 GO:0003700|GO:0006355
Gabi3372g00020 493 FunFam BZIP family transcription factor 191 240 - -
Gabi3372g00020 493 MobiDBLite consensus disorder prediction 80 106 - -
Gabi3372g00020 493 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 195 210 IPR004827 GO:0003700|GO:0006355
Gabi3372g00020 493 Pfam Seed dormancy control 271 346 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3372g00020 Gabi-Chr3372 232895 241051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3372g00020 148 493 bZIP Transcription Factor Family AT1G08320 69.602 4.62e-180 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi3372g00020 DOG1 2.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3372g00020 K14431 - gmx:100101904 742.265