Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3372g00013 ATGAGTTTGATGGAGTTTAATAATGTAGAGGACAAGAATCTCTACCTTCATGCCCCAACTTTCATTGAGTGGCTCAAACCATATTCCTCTCCTTCATATCTAACTTCATCTGTATTATCATCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTATAATCAGAACCATGAGAAGACTATCCAATTTTTTCCTATTTTAAGTGGTTCAAAGTCTTCAAAAGAGGAAGAACATGAAGTACAAATGGAGAGTTTTGAGGTGAAAAAAGAAAAGGTTGAACAAGTAACTGTAGCTTTGCACATTGGATTGCCTGACACTACTACTACAGTAGATCCTGAAGCTGGTGATGATGATAAGAAGGTTTTCCATGTTAAGGAAGAAGAGCCCTTGAAGAAAACCTTCCATGGTTGCTCTTTTAACACAGAGAGAAGGTTTTGGATACCAACTCCTGCTCAGATTCTTGTTGGGCCTATGCAGTTTGCTTGCTCCATTTGCAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCCGAATTTAGGAAAGGACCAGACTCACTAAGAGGAACACAACCAGCTGCAATGCTAAGGCTACCATGTTATTGCTGTGCACAGGGTTGCAAGAACAACATCAATCATCCAAGAGCTAAGCCCTTGAAGGACTTTAGAACTCTCCAAACTCATTACAAAAGAAAGCATGGGACAAAACCATTTATGTGTAGAAAATGTGGGAAAACATTTGCAGTTAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATCCTCCACGAGAGGCAATCTTGTTCGGGACAGGTCCAGGATTAAGACTTTGA 858 0.4068 MSLMEFNNVEDKNLYLHAPTFIEWLKPYSSPSYLTSSVLSSPSSSSSSSSYNQNHEKTIQFFPILSGSKSSKEEEHEVQMESFEVKKEKVEQVTVALHIGLPDTTTTVDPEAGDDDKKVFHVKEEEPLKKTFHGCSFNTERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYPPREAILFGTGPGLRL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3372g00013 285 Coils Coil 73 93 - -
Gabi3372g00013 285 SMART c2h2final6 242 262 IPR013087 -
Gabi3372g00013 285 SMART c2h2final6 158 180 IPR013087 -
Gabi3372g00013 285 SMART c2h2final6 205 237 IPR013087 -
Gabi3372g00013 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 185 IPR013087 -
Gabi3372g00013 285 SUPERFAMILY beta-beta-alpha zinc fingers 227 262 IPR036236 -
Gabi3372g00013 285 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Gabi3372g00013 285 Gene3D Classic Zinc Finger 157 180 - -
Gabi3372g00013 285 PANTHER ZINC FINGER PROTEIN WIP2 22 269 IPR043584 GO:0003700|GO:0010468
Gabi3372g00013 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 242 262 IPR013087 -
Gabi3372g00013 285 SUPERFAMILY beta-beta-alpha zinc fingers 126 181 IPR036236 -
Gabi3372g00013 285 Gene3D Classic Zinc Finger 225 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3372g00013 Gabi-Chr3372 139796 143731 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3372g00013 6 269 C2H2 Transcription Factor Family AT1G08290 50.820 7.45e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3372g00013 zf-C2H2_6 0.00012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3372g00013 - - gmx:100788451 406.757