Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3372g00001 ATGGGGTTTTCCAAAATTTTAAGTTTCACCCTTCTCTTGTTTATTGGATATACTGTGGTGAATGGATCCACCCCAAAGCATTATATAGTTTACATGGGAGAGCATTCACACCCCAGTTCAGAATCAGTAATAGCAGCAAACCATGATATGCTAGCTTCAGTCACTGGAAGTCTCAGTGAAGCAAAGGCAGCAACAGTACACCACTATAGTAAAAGCTTTCGAGGCTTCTCGGCCATGGTTACACCAGAGCAAGCTAATCAACTTGCAGAATATGACTCGGTTGTGTCTGTTTTTGAGAGCAAAATGAATCAGCTCCACACAACACATTCTTGGGATTTTCTTGGATTAGACTCTGTCTACAAGAGCAACCATATAACACTGGACTGCGCATCTGATGTCATTGTTGGTGTCATTGACTCTGGGGTGTGGCCGGAATCCGAAAGCTTCACTGATTATGGATTAGGTCCTGTGCCCGAGAAATTCAAGGGAGAGTGTGTTACTGGTAAAAATTTCACACTAGCCAATTGCAACAAGAAAATTATTGGTGCCCGGTTCTATTCAAAAGGGTTGGAGGCAGAACTTGGTGGTCCTCTGGAAGATGTTGTTAACCAGATTTTCTTCCGGTCAGCTCGAGATAGTGATGGACATGGAAGCCACACTGCTTCCACTATTGCAGGATCCATTGTTGCTAATGCAAGTTTATTTGGTATAGCCAAAGGAACTGCAAGAGGTGGTGTCCCAAGTGCTAGACTAGCAATCTACAAGGCTTGTTGGTTTGGGTTTTGCAATGATGCTGATATTTTTTCTGCCATGGATGATGCCATTCATGATGGGGTTGACATACTATCTCTTTCTTTTGGCCCTAATCCTCCTCAGCCAAGTTACTTCAAGGATGCAGTCACTGTTGGATCATTCCATGCATTCCAAAAGGGTATTCTTGTTTCTGCTTCAGCTGGAAACTCGGTTTTTCCTAGTACTGCATGCAATGTTGCTCCTTGGATCCTCACTGTTGCTGCTAGCACCATAGACAGGGAATTCAGTTCAAATATCTACCTTGGTAATTCAAAGGTTTTAAAGGGTTCTTCTTTGAATCCAATAAAAATGGAGCATTCTTATGGTTTGATATATGGAAGTGCCGCTGCAGCTGCAGGAGTTCCAGCAACAAATGCAAGCTTCTGCAAGAACAATACTCTAGATCCTGCCTTAATCAAGGATAAAATTGTGATCTGTACAATTGACGAAATCAGGGATAACAGACCAGAGAAGTCCATAATAGTAAAGCAAGGTGGGGGTGTTGGAATGATACTTATTGATCATAATGCCAAAGATATTGGTTTTCAGTTTGTCATCCCTAGCACTCTCATTGGTCAGGATGCCGTAGAAGAGCTTCAAGCATATATAAAGACAGAGAAGAATCCCATTGCTAGAATCTACCCAACAATAACTGTTGTTGGTACAAAACCTGCACCAGAAGTGGCAGCTTTTTCTTCCATGGGGCCAAATATAATAACACCAGATATTATTAAGCCTGACATCACAGCACCTGGAGTGAATATTTTGGCAGCATGGTCTCCATTGGCAGCTGAAGCCACAGTTGAACAACAATCTGTCAACTACAACATCATTTCAGGAACATCAATGGCTTGTCCACACATATCTGCTGTTGCAGCAATTATAAAATCTTACCACCCCTCATGGAGTCCTGCAGCCATAATGTCTGCAATAATGACAACAGCAACAGTTATGGATAACACACATGGCCTCATAGGAAGAGATCCAAATGGAACTGAAACCACACCTTTTGACTATGGATCTGGACATGTTAACCCTGTTGCATCACTAAATCCTGGATTAGTATATGATTTTAATTCCCAAGATGTTCTCAATTTTCTCTGCAGCAATGAGGCAAGCCCAGCACAACTTAAAAACCTCACTGGGGAATTTACTCAATGTCAGAAATCTCCTACAGCTTCCTACAACTTCAATTATCCATCAATTGGTGTGTCCAATTTGAATGGAAGTTTATCTGTATATCGTACAGTTACTTACTATGGTTTAGAACCAACAGTATATTATGCAAGTGTTGAAAATCCATCTGGTGTAAATGTTAAAGTTACACCATCAGAGCTTAAGTTCTGGAAAACAGGAGAGAAGATAACTTTCAGGATTGATTTCAACCCTTTCAAGAATAGCAATGGAAACTTTGTGTTTGGTGCCTTGACATGGAACAATGGCATTCAAAGGGTTAGGAGTCCTATTGGTCTCATTGTACTATCTACTTAG 2283 0.4122 MGFSKILSFTLLLFIGYTVVNGSTPKHYIVYMGEHSHPSSESVIAANHDMLASVTGSLSEAKAATVHHYSKSFRGFSAMVTPEQANQLAEYDSVVSVFESKMNQLHTTHSWDFLGLDSVYKSNHITLDCASDVIVGVIDSGVWPESESFTDYGLGPVPEKFKGECVTGKNFTLANCNKKIIGARFYSKGLEAELGGPLEDVVNQIFFRSARDSDGHGSHTASTIAGSIVANASLFGIAKGTARGGVPSARLAIYKACWFGFCNDADIFSAMDDAIHDGVDILSLSFGPNPPQPSYFKDAVTVGSFHAFQKGILVSASAGNSVFPSTACNVAPWILTVAASTIDREFSSNIYLGNSKVLKGSSLNPIKMEHSYGLIYGSAAAAAGVPATNASFCKNNTLDPALIKDKIVICTIDEIRDNRPEKSIIVKQGGGVGMILIDHNAKDIGFQFVIPSTLIGQDAVEELQAYIKTEKNPIARIYPTITVVGTKPAPEVAAFSSMGPNIITPDIIKPDITAPGVNILAAWSPLAAEATVEQQSVNYNIISGTSMACPHISAVAAIIKSYHPSWSPAAIMSAIMTTATVMDNTHGLIGRDPNGTETTPFDYGSGHVNPVASLNPGLVYDFNSQDVLNFLCSNEASPAQLKNLTGEFTQCQKSPTASYNFNYPSIGVSNLNGSLSVYRTVTYYGLEPTVYYASVENPSGVNVKVTPSELKFWKTGEKITFRIDFNPFKNSNGNFVFGALTWNNGIQRVRSPIGLIVLST 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3372g00001 760 ProSiteProfiles Serine proteases, subtilase domain profile. 110 614 - -
Gabi3372g00001 760 SUPERFAMILY Subtilisin-like 105 618 IPR036852 GO:0004252|GO:0006508
Gabi3372g00001 760 CDD PA_subtilisin_like 349 477 - -
Gabi3372g00001 760 CDD Peptidases_S8_3 104 580 IPR034197 -
Gabi3372g00001 760 Gene3D Peptidase S8/S53 domain 132 626 IPR036852 GO:0004252|GO:0006508
Gabi3372g00001 760 FunFam Subtilisin-like protease SBT5.3 19 106 - -
Gabi3372g00001 760 Gene3D - 631 757 - -
Gabi3372g00001 760 PRINTS Subtilisin serine protease family (S8) signature 212 225 IPR015500 -
Gabi3372g00001 760 PRINTS Subtilisin serine protease family (S8) signature 543 559 IPR015500 -
Gabi3372g00001 760 PRINTS Subtilisin serine protease family (S8) signature 130 149 IPR015500 -
Gabi3372g00001 760 Pfam Peptidase inhibitor I9 27 106 IPR010259 -
Gabi3372g00001 760 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 28 753 IPR045051 -
Gabi3372g00001 760 ProSitePatterns Serine proteases, subtilase family, serine active site. 544 554 IPR023828 -
Gabi3372g00001 760 FunFam Subtilisin-like protease SBT1.5 132 368 - -
Gabi3372g00001 760 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 106 IPR037045 -
Gabi3372g00001 760 Pfam Fibronectin type-III domain 660 753 IPR041469 -
Gabi3372g00001 760 Pfam Subtilase family 131 586 IPR000209 GO:0006508|GO:0008236
Gabi3372g00001 760 Gene3D - 343 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3372g00001 Gabi-Chr3372 19943 24136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3372g00001 28 753 Subtilisin-like Serine Gene Family AT2G04160 45.020 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3372g00001 - - gmx:100792672 1273.07