Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi336g00001 ATGGCATCTTCATCGAACTCACCATGTGCTGGATGCAAGTTCCTGCGAAGAAAGTGCCAACCTGAGTGCATTTTTGCACCATATTTCCCACCAAATGAGCCCAACAAGTTTGTACATGTTCACAGAATCTTTGGTGCAAGCAATGTTGCAAAGCTTCTCAGTGATTTGCAACCTAGCCAGCGTAAAGACGCTGCGGATTCCCTTGCCTATGAAGCTGATATCCGCTTCCGAGACCCTGTGAATGGCTGTTTTGGAATCATCTCTCATCTTGAGGATCAGCTTCGACAGATTCAACTAGACCTTTACACTGCCCAATATGAGCTTAATAGGATGAATCAAAATTTGGCCTTCAACACTGGACATGGACTTATTGCTGCGGCTGGCACCTCGAACGTGGTCCCTATCACTGCCACCACTAACCACCACATGTCAAACATGGGTGGTGGCGGTGGTAGTCTTGTTAACCACTATCCTTATCATCACAACTATCAGACTTTTGCTAGGAATCAGTTCCACCAGCAGCAGCAGATAGTTAATGGAGGGAACAACTATGAGGCTAATGTCTTGCCTATAAACGTAGCTGAAAATTTTGGGCAACTCAATGCTGCTGCAGCTGGTGAAAACCGCGGCAATGTGCATCACTATTAG 648 0.4614 MASSSNSPCAGCKFLRRKCQPECIFAPYFPPNEPNKFVHVHRIFGASNVAKLLSDLQPSQRKDAADSLAYEADIRFRDPVNGCFGIISHLEDQLRQIQLDLYTAQYELNRMNQNLAFNTGHGLIAAAGTSNVVPITATTNHHMSNMGGGGGSLVNHYPYHHNYQTFARNQFHQQQQIVNGGNNYEANVLPINVAENFGQLNAAAAGENRGNVHHY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi336g00001 215 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Gabi336g00001 215 Pfam Lateral organ boundaries (LOB) domain 8 104 IPR004883 -
Gabi336g00001 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi336g00001 Gabi-Chr336 66664 67311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi336g00001 2 212 AS2 family AT1G65620 48.815 9.27e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi336g00001 LOB 6.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi336g00001 - - gmx:100806890 231.106