Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3362g00001 ATGGGTTCTAAGAGGCCACTCTTGTTACCATCTCCAAGAACTCCTAATAATAACCAAGAGCTTCCTACCCTTCATGTTTTTCCTGAACTACCTAAATCAAAGTCAAGTTCTAGCAACACTGTTACGTTCTGTGGAATAGACACGACCAACCCAGTTGAGAATTCTTCAAAGTCATCGTCACGTAGAAGCGCCATGTCCATTCATTCTGGAAGCTCTGGCAGGAACAACTCTGTCAGAGAAGAGAGTGTTAAACCTGTTCGTTATGGCTCAAAGGGTGCTGATTCTGATGGACTCACCATGTCTCAGAAGGAACTCAAAGATGAGGATGCAAGGTTGGTTTATATAAATAATCCTGAGAAGACCAATGAGAGGTTCGAATTTTCAGGAAATTCAATTCGTACTGGGAAATACTCCATCATCACTTTCATTCCCAGGAACCTGTTTGAACAATTCCATAGAGTTGCTTACATTTATTTTCTGATAATTGCCATTCTCAATCAAATTCCTCAGCTTGCAGTGTTTGGGAGGGGTGTTTCTGTTTTGCCATTAGCCTTTGTTTTGCTTGTTACGGCTGTGAAGGATGCTTATGAGGATTGGAGGCGGCACCAATCAGATAATATTGAGAACAACAGGTTAGCATCAGTTTATGTCGATGATAAATTCGTAGACAAGAAATGGAAGGATATAAGAGTTGGTGAGATCATAAAAATCAAAGCAAATGAAACCATTCCTTGTGATATTGTGTTGCTCTCAACTAGTGATCCTACTGGAGTTGCATATGTGCAGACTATTAATCTAGATGGAGAGTCCAATTTGAAGACTAGGTATGCAAAACAAGAGACACATTCAAAGATGCCTGAAAGGGAGAGATTTCATGGCTTAATTAGGTGTGAGAAGCCCAATAGGAACATTTATGGATTTCTTGCTAACATGGATATTGATGGCAAGAGGTTATCACTTGGATCCTCAAATATTGTTCTTAGAGGATGTGAAATGAAGAATACTAGTTGGGCACTTGGTGTTGCTGTGTATTGTGGCAGTGAGACTAAAGCAATGCTCAACAGCTCTGGAGCTCCATCGAAGAGAAGCCGGCTTGAAACTCGCATGAATTCTGAGATCATCATCCTCTCCTTCTTTCTTGTAGCATTGTGTACAATCACCTCAGTTTGTGCTGCTGTTTGGTTAAAGCGCAAAAAGGATGAATTGGATCTCTTGCCTTATTATAGGAAACTGGATTTTTCAGAAGAAGGGGAAGTTAAAAACTATGAATACTATGGATGGGGATTGGAAATCTTTTTCACATTTCTCATGTCAGTTATAGTGTTCCAGGTCATGATTCCCATATCCTTGTACATTTCTATGGAGCTTGTTCGTGTTGGTCAGGCCTACTTCATGATCCGAGACAACAGAATGTATGATGAAGAAACACATGCAAGATTTCAATGCAGGGCTTTGAACATTAATGAAGATTTGGGGCAAATTAAATATGTCTTCTCAGACAAAACTGGTACACTTACTCAGAACAAGATGGAGTTTCAATGTGCCAGCATCTGGGGTGTTGATTACAGTTCTACAAAAGCCATCCTGGAGGATGAGCTAGTTGAATACTCTGTGAAAGTGGATGGAAAAGTCTTGAGACCAAAGATGAAGGTGAAAGTTAATCCAGAGCTTTTGCAATTATCAAGAAATGGACTTGAAAATAAGGAAGGAAAAGAGATATATGATTTCTTTCTAGCACTAGCAACCTGCAATACTATTGTGCCTCTTGTTGTTGACACATCTGATCCTGATGTCAAGCTGATAGATTACCAAGGGGAATCACCAGATGAACAAGCATTAGCATATGCTGCAGCTGCCTATGGTTTTGTGCTTATAGAACGAACTTCGGGTCATATAGTCATTGATATTCAGGGAGAAAGACTAAAGTTCAATGTCTTAGGTATGCATGAATTTGATAGTGATAGGAAGAGGATGTCGGTTATATTGGGGTACCCTGATAATTCTGTGAAACTTTTTGTCAAAGGGGCAGATACAACCATGTTTAGTGTGATAGATAAATCATTTAACATGGAAAGAGTAAAAGCAACTGAAACCCATATTCACTCTTATTCTTCCACGGGTTTGAGAACACTTGTTATTGGGATGAGGGCATTGATTGCTTCAGAATTTGAGCAATGGCATGTTGCTTATGAGGCAGCAAATAATGCTTTGTTTGGTAGGGCTGCATTGCTTCGCAAGGTTTCTAACAATGTAGAGAACAATCTGAGCATATTGGGAGCATCTGCTATTGAAGATAAACTGCAGCAAGGTGTTCCAGAATCCATTGAGTCTCTAAGGACTGCAGGTATTAAAGTATGGGTTTTAACTGGGGACAAACAAGAAACTGCCATATCAATTGGTTACTCCTCAAAGCTCCTAACAAGCAACATGACTCAAATTATAATTAATAGCAATAGTAGAGACTCATGTAGAAGGAGATTACAAGATGCCCTTGCAATGTCTAACAAACTCATGTCTAACAATAATGGAGGAAGTTCTGATGGACCTACAACTCCAATAGCTTTGATTATTGATGGTACCAGCCTTGTACATATTCTTGACAGTGAACATGAAGAGCAGCTATTTGAACTTGCAAGAAAATGTGCTGTTGTTCTATGTTGCCGAGTAGCTCCACTGCAAAAGGCTGGGATTGTTGCCCTTGTGAAGAATAGGACATCTGACATGACACTAGCTGTTGGAGATGGTGCTAATGATGTCTCAATGATCCAAATGGCTGATGTTGGAGTTGGCATAAGTGGACAAGAGGGTCGGCAAGCTGTTATGGCATCAGATTTTGCAATTGGGCAGTTTAGGTTTTTAGTTCCTCTCTTATTGATACATGGGCATTGGAATTACCAACGGCTTGGTTACATGATACTATACAACTTTTACAGAAATGCTGTCCTTGTTCTTGTCTTATTTTGGTATGTGCTCTTCACTGCCTTCACTTTGACAACTGCTATAAATGAATGGAGCTCCACTTTGTATTCTATAATCTACAGTTCATTGCCAACTATTATTGTTGGTATTCTAGACAAAGATCTTGGGAGAAGGACTCTCCTAAAGTATCCTCAGCTTTATGGGGCTGGTCAGAGACAAGAGGCCTACAACAAAAAACTATTTATGTTTACAATGGTTGATACTTTGTGGCAAAGCATGGTTATCTTCTGGGCTCCCCTATTTGCATATTGGAGTAGCACAGTTGATGTGGCAAGCATTGGAGACCTTTGGACTCTTGCAGTTGTTATTTTGGTTAATTTACACTTGGCCATGGATGTTGTCAGATGGTACTGGGTGACTCATGTTGCAATTTGGGGGTCTATTGTTGCAACTTTCATTTGTGTCATGATTATTGATGCTATACCTACACTTCCTGGTTACTGGGCCTTCTTTGATGGTGCAAGTACTGGATTGTTCTGGTTATTGTTGCTCGGAATTGTGATAACAGCATTGTTGCCTCGTTTGGTTATAAAATTTATTCATGAATATTATTTTCCTAATGATATTCAGATTTCTAGAGAATCTGAGAAGGTTGGGAATGAGAGAGGTATTGAAAGTGGACAGATAGAAATGCTTCCTGTATCAGATAGAACACCAAGATGA 3642 0.3965 MGSKRPLLLPSPRTPNNNQELPTLHVFPELPKSKSSSSNTVTFCGIDTTNPVENSSKSSSRRSAMSIHSGSSGRNNSVREESVKPVRYGSKGADSDGLTMSQKELKDEDARLVYINNPEKTNERFEFSGNSIRTGKYSIITFIPRNLFEQFHRVAYIYFLIIAILNQIPQLAVFGRGVSVLPLAFVLLVTAVKDAYEDWRRHQSDNIENNRLASVYVDDKFVDKKWKDIRVGEIIKIKANETIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETHSKMPERERFHGLIRCEKPNRNIYGFLANMDIDGKRLSLGSSNIVLRGCEMKNTSWALGVAVYCGSETKAMLNSSGAPSKRSRLETRMNSEIIILSFFLVALCTITSVCAAVWLKRKKDELDLLPYYRKLDFSEEGEVKNYEYYGWGLEIFFTFLMSVIVFQVMIPISLYISMELVRVGQAYFMIRDNRMYDEETHARFQCRALNINEDLGQIKYVFSDKTGTLTQNKMEFQCASIWGVDYSSTKAILEDELVEYSVKVDGKVLRPKMKVKVNPELLQLSRNGLENKEGKEIYDFFLALATCNTIVPLVVDTSDPDVKLIDYQGESPDEQALAYAAAAYGFVLIERTSGHIVIDIQGERLKFNVLGMHEFDSDRKRMSVILGYPDNSVKLFVKGADTTMFSVIDKSFNMERVKATETHIHSYSSTGLRTLVIGMRALIASEFEQWHVAYEAANNALFGRAALLRKVSNNVENNLSILGASAIEDKLQQGVPESIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTSNMTQIIINSNSRDSCRRRLQDALAMSNKLMSNNNGGSSDGPTTPIALIIDGTSLVHILDSEHEEQLFELARKCAVVLCCRVAPLQKAGIVALVKNRTSDMTLAVGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAIGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAVLVLVLFWYVLFTAFTLTTAINEWSSTLYSIIYSSLPTIIVGILDKDLGRRTLLKYPQLYGAGQRQEAYNKKLFMFTMVDTLWQSMVIFWAPLFAYWSSTVDVASIGDLWTLAVVILVNLHLAMDVVRWYWVTHVAIWGSIVATFICVMIIDAIPTLPGYWAFFDGASTGLFWLLLLGIVITALLPRLVIKFIHEYYFPNDIQISRESEKVGNERGIESGQIEMLPVSDRTPR 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3362g00001 1213 MobiDBLite consensus disorder prediction 1 101 - -
Gabi3362g00001 1213 NCBIfam phospholipid-translocating P-type ATPase 127 1187 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Gabi3362g00001 1213 SUPERFAMILY Calcium ATPase, transmembrane domain M 126 1179 IPR023298 -
Gabi3362g00001 1213 SUPERFAMILY HAD-like 485 953 IPR036412 -
Gabi3362g00001 1213 MobiDBLite consensus disorder prediction 30 79 - -
Gabi3362g00001 1213 SFLD p-type atpase 482 963 IPR044492 -
Gabi3362g00001 1213 Gene3D - 758 952 IPR023214 -
Gabi3362g00001 1213 Pfam E1-E2 ATPase 213 455 - -
Gabi3362g00001 1213 NCBIfam HAD-IC family P-type ATPase 430 519 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3362g00001 1213 NCBIfam HAD-IC family P-type ATPase 883 998 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3362g00001 1213 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 504 770 IPR023299 GO:0000166
Gabi3362g00001 1213 FunFam Phospholipid-transporting ATPase 754 952 - -
Gabi3362g00001 1213 Pfam Phospholipid-translocating P-type ATPase C-terminal 940 1180 IPR032630 -
Gabi3362g00001 1213 ProSitePatterns E1-E2 ATPases phosphorylation site. 500 506 IPR018303 -
Gabi3362g00001 1213 SFLD C1.7: P-type atpase like 482 963 - -
Gabi3362g00001 1213 Gene3D - 184 354 - -
Gabi3362g00001 1213 FunFam Phospholipid-transporting ATPase 185 354 - -
Gabi3362g00001 1213 PRINTS P-type cation-transporting ATPase superfamily signature 498 512 - -
Gabi3362g00001 1213 PRINTS P-type cation-transporting ATPase superfamily signature 912 931 - -
Gabi3362g00001 1213 Pfam Cation transport ATPase (P-type) 606 681 - -
Gabi3362g00001 1213 SUPERFAMILY Calcium ATPase, transduction domain A 210 351 IPR008250 -
Gabi3362g00001 1213 CDD P-type_ATPase_APLT_Dnf-like 129 1072 - -
Gabi3362g00001 1213 FunFam Phospholipid-transporting ATPase 602 735 - -
Gabi3362g00001 1213 Pfam Phospholipid-translocating ATPase N-terminal 113 177 IPR032631 -
Gabi3362g00001 1213 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 104 1190 - -
Gabi3362g00001 1213 Gene3D - 603 757 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3362g00001 Gabi-Chr3362 17395 23648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3362g00001 84 1213 Primary Pumps ATPases AT5G04930 70.088 0.0 1696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3362g00001 K14802 - gmx:100813982 1930.22