Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3361g00001 ATGGAGAAAGATTTGGTTCACCGTTTCCATAAAAGGAAAAGATCCAGCAGCAATCCAGTCCAGAACCATACGCGACGCAGGCTTACTACTATTGAATATGAATACATACCTCTGCCGGAAGATGAAGAAGAAGAACTGGTAGAGGAGGAAGTAGTTGAGAAAGTGGTAGAGAAAGAAGAAGAAGAAGAACCAGTAGAGGAGGAAGAGGAAGAAGATCCAGAAGAGGAAGAAGAAGAAGAACCAGTAGAGGAGGAAGAGGAAGAAGATCCGGAAGAGGAAGAAGAAGATCGGGAAGAGGAGGGAGAAGGCTGTGAAATTGAGTTGGAATACTATGTGCATTGCCAAGGGAGTGAAAATCATGATGAGGATGTTGGAGAAAACAATCCTATGGAAGATGATGAAGCAACATCTAAGTTTAAGGGCATAGACCCTATTTCTGTCACCCTTTCTAACCCTAAAGTCCTCGACTGCTGCAGCTGCTGTCAACCATTGACTATTCCTGTCTTCCAGTGCGAGAAAGGGCATTTTGCTTGCTTTACCTGTTGTGCTCTTGGAAGGGAGTGTCTTGAGTGCTCATCTCGCATTCATTACAACCGTTGCAAAGCTATTGAGAAAGTGTTGGAATCTATTAACATATCATGCCTTAATGCAAAATATGGTTGCAAAGAGACATTGAGTTACGGTGAAAGGAATAACCATGAGAAGAAATGTATCTACATTCCATGTTTATGCCCACACAAAGGTTGTGACTTTGTTGCCTCATCAAAGGAGTTATCCCTCCACTTCAGCAAAAAACATAAAAGTTCTGGAATCCAATTTTTATACAATCACTCTTTCCATGTATCCGTGAATTCTGATGATGAATTTCTTATTCTTCAAGAGCAAACAGATGGAAATTTGTTTATTCTCAAAAACAATGTTGTTGAGAATATGGGAAATGTGGTCACTATTAGCTGCATGGGGCCTAACTCTTCTCAGCCAGGGTATGGTCATGCTATAGCCGCCAAGTCTAACGGAAGCTGTCTAACGTTGATGTCTTCTACCAAGAACATTCAAATGGGCACTGCAGATATTCCTTCATCAGGGTTCCTTGTGATTCCATTTGACTGTTTTAATTGTTATGCATCTCTCCATCTGGAGATTTGCATAAGAAAAAGATAG 1161 0.4109 MEKDLVHRFHKRKRSSSNPVQNHTRRRLTTIEYEYIPLPEDEEEELVEEEVVEKVVEKEEEEEPVEEEEEEDPEEEEEEEPVEEEEEEDPEEEEEDREEEGEGCEIELEYYVHCQGSENHDEDVGENNPMEDDEATSKFKGIDPISVTLSNPKVLDCCSCCQPLTIPVFQCEKGHFACFTCCALGRECLECSSRIHYNRCKAIEKVLESINISCLNAKYGCKETLSYGERNNHEKKCIYIPCLCPHKGCDFVASSKELSLHFSKKHKSSGIQFLYNHSFHVSVNSDDEFLILQEQTDGNLFILKNNVVENMGNVVTISCMGPNSSQPGYGHAIAAKSNGSCLTLMSSTKNIQMGTADIPSSGFLVIPFDCFNCYASLHLEICIRKR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3361g00001 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 262 IPR013083 -
Gabi3361g00001 386 SUPERFAMILY TRAF domain-like 209 384 - -
Gabi3361g00001 386 Pfam Seven in absentia protein family 199 375 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gabi3361g00001 386 MobiDBLite consensus disorder prediction 1 103 - -
Gabi3361g00001 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 92 385 IPR044286 -
Gabi3361g00001 386 MobiDBLite consensus disorder prediction 36 103 - -
Gabi3361g00001 386 ProSiteProfiles Zinc finger SIAH-type profile. 209 267 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3361g00001 Gabi-Chr3361 5337 7241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3361g00001 154 267 C3H Transcription Factor Family AT2G41980 29.915 3.91e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3361g00001 K04506 - qsa:O6P43_009323 270.011