Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi335g00001 ATGAGTCTAAGTTACGAGCAGAGGCTTCAGGTTGTAGCCGGAATTGTGATTGAAGACGACGCACGCGCCGGCGATGCGCCGCCTTGTTTGAAAGAGCTTGGGCTCAGGGCGACCCTCAAACCCTACCAGGTAGAAGGGGTTTCGTGGCTTATTCGGAGGTATAAACTCGGCGTCAACGTTATCCTTGGGGATGAGATGGGGCTGGGCAAGACTTTGCAAGCTATCTCCTTTTTAAGCTTTTTAAAAGTCCGCAGATTGTCACTTGGACCATTTTTGGTTATATGTCCTTTAAGTGTTACCGATGGTTGGGTGTCAGAGATAGTCAAATTTACCCCTAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAATACAGGCGTAATCTACGTATGAAAATACATGAACATGTTACAGGGCAGTCATCAACTCTTAATGTCTTGTTACCTTTTGATGTGCTGTTAACAACATATGACATTGCAATGATGGATCAGGATTTCCTTTCTCAGATACCATGGCAGTATGCAATCATTGATGAAGCTCAAAGACTTAAAAACCCGTCAAGTGTTTTATTTAGTATTCTCAAAGATCGCTATATCATGCCAAGACGGTTGTTGATGACTGGTACACCTATTCAAAACAATCTTTCGGAACTGTGGGCTTTGCTGTATTTTTGCATGCCTTCTGTCTTTGGTACACTGGATGAGTTCCTTTCTACATTCAAGGACATCAGCGATCTTACAGCAGTTAATGATGCTCCAAAGGTAAAGGAGCGACTAAAAATTCTGAGAAGTGTATTGGGAGTCTTTATGCTTCGACGTACCAAAGCAAAGCTTATGGAGTGCGGAAATTTAGTGCTGCCACCTCTCACTGAGTCAACTGTGTTAGTACCCCTTGTCAGCCTGCAAAAAAAGGTCTACTTGTCAATATTGAGGAAGGAACTTCCTAAGTTACTTGCACTATCCTCTGGAACTTCAAATCATCAGTCACTACAGAATATTGTGTTACAACTTAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATCGAGCCCGAACCTTACGAAGAAGGGGAACATCTGGTTCTGGCCAGTGGAAAACTGCTGATTCTGGACCAACTTCTTCAGAAGCTACGTTATTCTGGACACCGTGTTCTTCTTTTTGCTCAGATGACCCATACACTTGACATTTTGCAGGATTTTCTGGAGTTACGAAAGTATTCTTATGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCAATTAGAAGTTTCAGCAGCTCATCAGCTAATCTAGGTTTGAATTCTGAAGCTGATCAAAATGGATCTTTTGTTTTTTTAATCTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAACCATGTTTTGTGTATAAACCTCGTTACAGAACGTACAGTGGAGGAAGTAATAATGCGGAGGGCAGAGAGAAAATTGCGGCTAAGCCTCAATGTTATAGGTGATAATATTCTGGAACATCATGATAAAGAAACATCTGGAGTTGGAACTAGTGATTTGAAATCCATCATATTTGGGTTACATATGTTTGATCCCAGTGATATTAATGATGGAAAACACGGGGACATGGAATTACCAGAAATTAATGCTATGGCTGACAAGGTGATTGCTATGCGTGATGAACAAATATTTGACAAGGATGACAGGAAATTTGAGGTCAATCCAAGAGACTTTGTAAAAGGAAATGATGTTAAGGAAGGAGGTTTTGCTTCTCTCTCCTGTGATCTTGGTCTTGATGAGGCTTCATATCTTTCTTGGATTAAAAAATTTGAGAAACTGTCTAAATCAAGTTGTGACTCAAACATGAACTTGAGGAGAAGAAGGAACTCAGATGAGGAAGAGTCTCACAAACTTGAGTCTGCAAAGAAGAAGGCAGAGGAAAATAAGCTGTCTAAGTGGAAAGCTCTAGGATACCATTCACTCAATGTGAAAGACCCTATCAGTCCACCAGATGGTGATATTATATCAGCTACCGGTTCTGTTCATTTTGTATATGGAGATTGTACAGCTCCATCAAACGTTTGTTCATCTGAACCTGCTATAATATTCTGTTGTGTTGACACCTCTGGACATTGGGGCCATGGTGGAATGTTTGATGCACTGACCAAACTTTCTACGAGCATTGGCGTTGCATATGAACGGGCTTCTGAGCATGGGGACCTGCATCTTGGTGATCTCCATCTTATAAAGCTTGAAGATGGCTGTGATGAACAAAATATGGATGGTAGTGCTCCCAAAATAGTTGCTTTAGCTGTGGTTCAGTCTTACAATCCAAGGCGTAAAGTCCCTCGCAGTGAAATCTCACTTCTCCACTTGGAAAGCTGCTTATCAAAGGCAGCATTCTCAGCCGCACAAAATTCTGCATCAATACACATGCCCCGGATTGGTTATCAAGATGGATCTGATCGTTCTGAGTGGTACACCATAGAACGGCTTCTAAGAAAATATGCTTCCATTTACAATATAAATATATTTGTATATTATTATCGAAGATCGCGTTAA 2640 0.4152 MSLSYEQRLQVVAGIVIEDDARAGDAPPCLKELGLRATLKPYQVEGVSWLIRRYKLGVNVILGDEMGLGKTLQAISFLSFLKVRRLSLGPFLVICPLSVTDGWVSEIVKFTPKLEVFKYVGDKEYRRNLRMKIHEHVTGQSSTLNVLLPFDVLLTTYDIAMMDQDFLSQIPWQYAIIDEAQRLKNPSSVLFSILKDRYIMPRRLLMTGTPIQNNLSELWALLYFCMPSVFGTLDEFLSTFKDISDLTAVNDAPKVKERLKILRSVLGVFMLRRTKAKLMECGNLVLPPLTESTVLVPLVSLQKKVYLSILRKELPKLLALSSGTSNHQSLQNIVLQLRKACSHPYLFPGIEPEPYEEGEHLVLASGKLLILDQLLQKLRYSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSANLGLNSEADQNGSFVFLISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTERTVEEVIMRRAERKLRLSLNVIGDNILEHHDKETSGVGTSDLKSIIFGLHMFDPSDINDGKHGDMELPEINAMADKVIAMRDEQIFDKDDRKFEVNPRDFVKGNDVKEGGFASLSCDLGLDEASYLSWIKKFEKLSKSSCDSNMNLRRRRNSDEEESHKLESAKKKAEENKLSKWKALGYHSLNVKDPISPPDGDIISATGSVHFVYGDCTAPSNVCSSEPAIIFCCVDTSGHWGHGGMFDALTKLSTSIGVAYERASEHGDLHLGDLHLIKLEDGCDEQNMDGSAPKIVALAVVQSYNPRRKVPRSEISLLHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSEWYTIERLLRKYASIYNINIFVYYYRRSR 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi335g00001 879 CDD SF2_C_SNF 359 502 - -
Gabi335g00001 879 Gene3D Leucine Aminopeptidase, subunit E, domain 1 706 879 IPR043472 -
Gabi335g00001 879 SMART helicmild6 396 491 IPR001650 -
Gabi335g00001 879 Coils Coil 647 674 - -
Gabi335g00001 879 SUPERFAMILY Macro domain-like 707 874 IPR043472 -
Gabi335g00001 879 FunFam Putative helicase CHR10 284 595 - -
Gabi335g00001 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 539 IPR027417 -
Gabi335g00001 879 SMART ultradead3 35 236 IPR014001 -
Gabi335g00001 879 Pfam SNF2-related domain 55 346 IPR000330 GO:0005524|GO:0140658
Gabi335g00001 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 273 IPR027417 -
Gabi335g00001 879 CDD Macro_Poa1p-like_SNF2 706 866 - -
Gabi335g00001 879 MobiDBLite consensus disorder prediction 647 669 - -
Gabi335g00001 879 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 30 596 IPR031053 GO:0003678|GO:0006281|GO:0006338
Gabi335g00001 879 Gene3D - 285 590 IPR027417 -
Gabi335g00001 879 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 542 IPR001650 -
Gabi335g00001 879 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 228 IPR014001 -
Gabi335g00001 879 Pfam Helicase conserved C-terminal domain 367 491 IPR001650 -
Gabi335g00001 879 Gene3D - 21 284 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi335g00001 Gabi-Chr335 58173 101724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi335g00001 365 529 RAD5 or RAD16-like Gene Family AT5G22750 36.145 5.52e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi335g00001 SNF2_N 1.3e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi335g00001 K20092 - gmx:100797182 1454.11