Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3352g00019 ATGCAAGCAGTAACAGAGCAAATCATCGAACAGCTAATCAAGCTAATAAAGCTTACCATAATGTTTTTCCAAGTCCTCCTAGTCCTCATCGAACAGCTGAACAAGCTAATCAAGTACTTGTTCCAACAACAAAGAAAGGTTCAAGTGCCCTTGGGTTACCAAAATATTGTGAAGAAAAATTCTCCCCTTGAAGCAAAGAAGAAACCCGCTAGTGGTCAACGCTCAAAATTCCTTTGCAGTATATGTTTTGATTCCAAGGCAGAGTCTGATATGTTCAGAGGAGGTGAGTGCAACCACCCCTTTTGCACTGATTGTATATCCAAGCACGTTGCTACTCAAATACAGCAAAATATTCTCAATGTTTATTGTCCAAATCCAAATTGTTCTATGGAATTGAAGCCACAACATTTGCAAACCACTTTGCCTAAAGATTTTATTGATCGTTGGGAATCTGCAAGATTGGAGTCTTCAATTGCTGCTTGGCAAAAGACTTATTGTCCCTTTAAGAATTGCTCAGTTTTGTTGGTGAATGATGGAAGAGAAGTTGTGACCGAGTCAGAGTGCCCCTTCTGTCACAGGCTATTTTGTGCGCAGTGCAAGGTTCCATGGCACGCACAAATGAATTGCAAGAAATTCCAAAAAAAGGTTCCAGGTCAACGCTCAAAAAGAAAGGTTCAAGGTCAACGCTCAAAAAGAAAGGTTCATGGTCAACGCTCAAAATTCCTTTGCAGTATATGTTTTGATTCCAAGGCAGAGTATGATCTGTTCAGAGGAGGTGAGTGCAACCACCCCTTTTGCACTGATTGTATATCCAAGCACGTTGCTACTCAAATACAGCAAAATATTCTCAATGTTCATTGTCCAAATCCAAATTGTTCTATGGAGTTGAAGCCACAACATTTGCAAACCCTTTTGCCTAAAGAAGTTATTGATCGATGGGAATCTGCAAGATACGAGTCTTCAATTGCTGGGTGGCAAAAGACTTATTGCCCCTTTAAGGATTGCTCTGTTTTGTTGGTTAATGATGGAGAAGTTGTGATCCAGTCAGAGTGCCCCTTCTGTCACAGGCTATTTTGTGCGCAGTGTAAGGTTCCATGGCACGCACGAATGAATTGCAACGAATTCCAAAAGTTGAAAAATGGTAAACGTGACAATGATTTGGATAGGAAGTTTTTGGAGTTAGCCAAAGGGAAAATGTGGCAGAAATGTCCCAAATGCTATATGTATGTCCAAAGACGTAGTGGATGTGAACACATGACCTGCAGGTGTGGATGCCACTTCTGCTACCAATGTGGAGAGAATTGGAAGTTTGGACATTTGTGCTGTAGGCTTCGGTCCAAATAA 1344 0.4107 MQAVTEQIIEQLIKLIKLTIMFFQVLLVLIEQLNKLIKYLFQQQRKVQVPLGYQNIVKKNSPLEAKKKPASGQRSKFLCSICFDSKAESDMFRGGECNHPFCTDCISKHVATQIQQNILNVYCPNPNCSMELKPQHLQTTLPKDFIDRWESARLESSIAAWQKTYCPFKNCSVLLVNDGREVVTESECPFCHRLFCAQCKVPWHAQMNCKKFQKKVPGQRSKRKVQGQRSKRKVHGQRSKFLCSICFDSKAEYDLFRGGECNHPFCTDCISKHVATQIQQNILNVHCPNPNCSMELKPQHLQTLLPKEVIDRWESARYESSIAGWQKTYCPFKDCSVLLVNDGEVVIQSECPFCHRLFCAQCKVPWHARMNCNEFQKLKNGKRDNDLDRKFLELAKGKMWQKCPKCYMYVQRRSGCEHMTCRCGCHFCYQCGENWKFGHLCCRLRSK 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3352g00019 447 ProSiteProfiles TRIAD supradomain profile. 239 447 IPR044066 -
Gabi3352g00019 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 324 IPR013083 -
Gabi3352g00019 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 161 IPR013083 -
Gabi3352g00019 447 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 231 438 IPR031127 GO:0004842|GO:0016567
Gabi3352g00019 447 CDD BRcat_RBR_unk 326 375 - -
Gabi3352g00019 447 ProSitePatterns Zinc finger RING-type signature. 97 106 IPR017907 -
Gabi3352g00019 447 FunFam RBR-type E3 ubiquitin transferase 74 160 - -
Gabi3352g00019 447 Pfam IBR domain, a half RING-finger domain 148 209 IPR002867 GO:0008270
Gabi3352g00019 447 Pfam IBR domain, a half RING-finger domain 317 372 IPR002867 GO:0008270
Gabi3352g00019 447 Pfam IBR domain, a half RING-finger domain 394 440 IPR002867 GO:0008270
Gabi3352g00019 447 ProSiteProfiles TRIAD supradomain profile. 75 240 IPR044066 -
Gabi3352g00019 447 SUPERFAMILY RING/U-box 326 377 - -
Gabi3352g00019 447 ProSiteProfiles Zinc finger RING-type profile. 79 124 IPR001841 -
Gabi3352g00019 447 SUPERFAMILY RING/U-box 391 442 - -
Gabi3352g00019 447 SUPERFAMILY RING/U-box 239 325 - -
Gabi3352g00019 447 SMART ibrneu5 147 209 IPR002867 GO:0008270
Gabi3352g00019 447 SMART ibrneu5 385 442 IPR002867 GO:0008270
Gabi3352g00019 447 SMART ibrneu5 311 372 IPR002867 GO:0008270
Gabi3352g00019 447 FunFam RBR-type E3 ubiquitin transferase 238 324 - -
Gabi3352g00019 447 SUPERFAMILY RING/U-box 74 161 - -
Gabi3352g00019 447 ProSitePatterns Zinc finger RING-type signature. 261 270 IPR017907 -
Gabi3352g00019 447 CDD Rcat_RBR_unk 399 435 - -
Gabi3352g00019 447 ProSiteProfiles Zinc finger RING-type profile. 243 288 IPR001841 -
Gabi3352g00019 447 SUPERFAMILY RING/U-box 161 215 - -
Gabi3352g00019 447 SMART ring_2 79 191 IPR001841 -
Gabi3352g00019 447 SMART ring_2 243 354 IPR001841 -
Gabi3352g00019 447 Gene3D - 370 445 - -
Gabi3352g00019 447 CDD BRcat_RBR_unk 162 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3352g00019 Gabi-Chr3352 390697 420029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3352g00019 243 432 C3H Transcription Factor Family AT2G19610 29.557 1.36e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3352g00019 K11975 - lang:109340029 332.798