Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3352g00017 | ATGGTTGGTCAATCTGGAATCCATGATAAGCACATGCAGATGCAGACTCAGGTGAAGAAGGATCGTGATGATGGAAAGAAGAAAGCAGCCACTGGTCAAACCTCAAAACTTCTTCGCTGTGGTGTATGTTTTGATTCCAAACCAGACTCTCATATGTTCAGAAGATGTCAATGCAACCACCCCTTTTGCACTGATTGCATATCCAATTACGTGGCTACTCAAATACAGAAAAATGTTGTGAATGTGAATTGTCCAAATCCAAAATGTTCTGTGGAGTTGAAGCCAAAACATTTGCAACCCATTATGCCTAAACAAGTTATTGATCGATGGGAATCAGCAAGATACGAGCTTTCACTTGCTGCGTGGCAAAAGACTTATTGTCCCTTTAAGGATTGCTCTGTTCTGTTGGTGAATGATGGAGGAAAAGTTGTGACTAGTTCTGAGTGCACTTCATGTCACAGACTATTTTGTGCGCAGTGTAAGGTTCCATGGCATGCAGAAATGAATTGCAACGAATTCCAAAAGTTGAAAAGTAGTGAAATTGAAAAGGATTTGGATAAGAAGTTTTTTGAGTTGGCCAAAGGGAAAATGTGGCAGAAATGTCCCACATGCTCTATCTATGTCGAAAGTTGTGGTGGATGTGAACACATAACCTGCAGGTGTGGACGCAACTTCTGCTACATCTGTGGGAAGAATTGGGAGTTTGGACATTTATGCTGTAGTCCTCGCTCCACCTGA | 738 | 0.4173 | MVGQSGIHDKHMQMQTQVKKDRDDGKKKAATGQTSKLLRCGVCFDSKPDSHMFRRCQCNHPFCTDCISNYVATQIQKNVVNVNCPNPKCSVELKPKHLQPIMPKQVIDRWESARYELSLAAWQKTYCPFKDCSVLLVNDGGKVVTSSECTSCHRLFCAQCKVPWHAEMNCNEFQKLKSSEIEKDLDKKFFELAKGKMWQKCPTCSIYVESCGGCEHITCRCGRNFCYICGKNWEFGHLCCSPRST | 245 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3352g00017 | 245 | CDD | BRcat_RBR_unk | 123 | 173 | - | - | |
| Gabi3352g00017 | 245 | ProSiteProfiles | Zinc finger RING-type profile. | 40 | 88 | IPR001841 | - | |
| Gabi3352g00017 | 245 | Gene3D | - | 168 | 242 | - | - | |
| Gabi3352g00017 | 245 | FunFam | RBR-type E3 ubiquitin transferase | 35 | 121 | - | - | |
| Gabi3352g00017 | 245 | SUPERFAMILY | RING/U-box | 35 | 117 | - | - | |
| Gabi3352g00017 | 245 | ProSitePatterns | Zinc finger RING-type signature. | 58 | 67 | IPR017907 | - | |
| Gabi3352g00017 | 245 | SUPERFAMILY | RING/U-box | 188 | 241 | - | - | |
| Gabi3352g00017 | 245 | SMART | ibrneu5 | 108 | 170 | IPR002867 | GO:0008270 | |
| Gabi3352g00017 | 245 | SMART | ibrneu5 | 183 | 240 | IPR002867 | GO:0008270 | |
| Gabi3352g00017 | 245 | SUPERFAMILY | RING/U-box | 121 | 175 | - | - | |
| Gabi3352g00017 | 245 | ProSiteProfiles | TRIAD supradomain profile. | 36 | 244 | IPR044066 | - | |
| Gabi3352g00017 | 245 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 26 | 233 | IPR031127 | GO:0004842|GO:0016567 | |
| Gabi3352g00017 | 245 | Pfam | IBR domain, a half RING-finger domain | 192 | 237 | IPR002867 | GO:0008270 | |
| Gabi3352g00017 | 245 | Pfam | IBR domain, a half RING-finger domain | 123 | 170 | IPR002867 | GO:0008270 | |
| Gabi3352g00017 | 245 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 34 | 120 | IPR013083 | - | |
| Gabi3352g00017 | 245 | MobiDBLite | consensus disorder prediction | 13 | 30 | - | - | |
| Gabi3352g00017 | 245 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Gabi3352g00017 | 245 | CDD | Rcat_RBR_unk | 197 | 233 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3352g00017 | Gabi-Chr3352 | 386243 | 387956 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3352g00017 | 40 | 230 | C3H Transcription Factor Family | AT2G19610 | 31.034 | 8.93e-20 | 85.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3352g00017 | K11975 | - | vvo:131630285 | 297.745 |