Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3352g00016 ATGGCTGGTCAATCCTCAAAACTCTTTTGCGGAATTTGCTTTGATTTCAAACCAGAGTCTGACATGTTCATAAGAAGTAAATGCAACCACCCCTTTTGCACTGACTGCATATCCAATTACGTGGCTACTCAAATACAGAAAAATGTTGTGAATGTGAATTGTCCAAATCCAAAATGTTCTGTGGAGTTGAAGCCAAAACATTTGCAACCCATTATGCCTAAACAAGTTATTGATCGATGGGAATCTGCAAGATACGAGTCTTCAATTGTTGGGTTGCAAAAGGCTTATTGCCCCTTTAAGGATTGCTCTGTTTTGTTGGTGAATGATGGAAACGTTGTGACTAATTCTGAGTGCACCTCCTGTCACAGACTATTTTGTGCGCAGTGTAAGGTTCCATGGCATGCAGGAACGGATTGCAAGGAATTTCAAAAGCTTAAAAGGAGTGAACGTGAAAAAGAATTGGATTTGATGTTTTGCGAATTGGCCAAACTGAAAATGTGGCAGAAATGTCCCACATGCTCTATCTATGTCGAAAGTTGTGGTGGATGTGAACACATAACCTGCAGGTGTGGACGCCACTTCTGCTACATCTGTGGGGAGAATTGGGAGTTTGGACATCTATGCTGTATCCTCGGTCCACATGAGATTTCACAGGTAGCTTTGGAACTCTTAGCATATAGCATATAG 687 0.4148 MAGQSSKLFCGICFDFKPESDMFIRSKCNHPFCTDCISNYVATQIQKNVVNVNCPNPKCSVELKPKHLQPIMPKQVIDRWESARYESSIVGLQKAYCPFKDCSVLLVNDGNVVTNSECTSCHRLFCAQCKVPWHAGTDCKEFQKLKRSEREKELDLMFCELAKLKMWQKCPTCSIYVESCGGCEHITCRCGRHFCYICGENWEFGHLCCILGPHEISQVALELLAYSI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3352g00016 228 CDD BRcat_RBR_unk 93 142 - -
Gabi3352g00016 228 SUPERFAMILY RING/U-box 94 145 - -
Gabi3352g00016 228 SUPERFAMILY RING/U-box 154 208 - -
Gabi3352g00016 228 SUPERFAMILY RING/U-box 5 87 - -
Gabi3352g00016 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 91 IPR013083 -
Gabi3352g00016 228 ProSiteProfiles Zinc finger RING-type profile. 10 58 IPR001841 -
Gabi3352g00016 228 CDD Rcat_RBR_unk 166 202 - -
Gabi3352g00016 228 FunFam RBR-type E3 ubiquitin transferase 5 91 - -
Gabi3352g00016 228 SMART ring_2 10 100 IPR001841 -
Gabi3352g00016 228 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Gabi3352g00016 228 ProSiteProfiles TRIAD supradomain profile. 6 218 IPR044066 -
Gabi3352g00016 228 Pfam IBR domain, a half RING-finger domain 94 139 IPR002867 GO:0008270
Gabi3352g00016 228 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 10 202 IPR031127 GO:0004842|GO:0016567
Gabi3352g00016 228 Gene3D - 137 219 - -
Gabi3352g00016 228 SMART ibrneu5 143 209 IPR002867 GO:0008270
Gabi3352g00016 228 SMART ibrneu5 78 139 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3352g00016 Gabi-Chr3352 353781 354602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3352g00016 3 199 C3H Transcription Factor Family AT2G19610 29.384 3.14e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3352g00016 K11975 - lang:109340029 286.189