Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3352g00015 ATGAAAAGAAAGGAGAAAGCAGCCATTGGGAGTTCTGGCACTTTCCATGATCCTCTCAAGCACGTGACGAAGAAGAGAGTATCATGTAAAGATCCAGAACTCCCAAACTCATCAGCAGGTCAAATAAACCACCAAAGTGTGCTAAACAAACAATTCCAGCAGACGAAAATATCTCTCGTTCTTGAAGGAAAGACGAAACCAGCCACGAAAGATCCTCTCATGCACGTGCCGAAGAAGAGAGTATCATGGAAAGATCAAGAACACCCAAACTCATCAGCAGGTCAAATAAACCACCAAAGTGTGCTCAACAAACAATTCCAGCAGACGAAAATAACTCTCGTTCCTGAAGGAAAGAAGAAACCAGCCACTGGTCAAACCTCAAAACTCCATTGTTGTGGTGTATGTTTTGATTTCAAACCAGACTCTCATATGTTCAGAAGATGTCAATGCAACCACCCCTTTTGCACTGATTGCATATCCAAGTATGTTGCCAATCAAATACAGCAAAATATTCTCAAGGTGAATTGTCCAAATCCAAAATGTTCTGTGGAATTGAAGCCAAAACATTTGCAAATCATTTTGCCTAAACAAGTTATTGATCGTTGGGAATCTGCTAGATGCGAGTCTTCAATTGCTGTGTCGGAAAAGACTTATTGCCCCTTTAAGAATTGCTCTGTTTTGTTGGTGAATGATGGAGGAAAAGTTGTTACCAGTTCTGAGTGCCCCTCCTGTCATAGACTATTTTGTGCGCAGTGTAAGGTTCCATGGCATGCAGAAATGAATTGCAACGAATTCCGAAAGTTGAAAAGGAGTAAAATTGAAAAGGACTTGGATACGAAGTTTTTGGAGTTAGCCAAAGGGAAAATGTGGCAGAAATGTCCCAAATGCTATATGTATGTTCAAAGACGTAGTGGATGTGAACACATGCTATGCAGGTGTGGATGCCAATTCTGCTACCACTGTGGGGAGAATTGGAATCAGTTTGGGCATCTATGCAATAGTCGTCGTTCAACATGA 1017 0.413 MKRKEKAAIGSSGTFHDPLKHVTKKRVSCKDPELPNSSAGQINHQSVLNKQFQQTKISLVLEGKTKPATKDPLMHVPKKRVSWKDQEHPNSSAGQINHQSVLNKQFQQTKITLVPEGKKKPATGQTSKLHCCGVCFDFKPDSHMFRRCQCNHPFCTDCISKYVANQIQQNILKVNCPNPKCSVELKPKHLQIILPKQVIDRWESARCESSIAVSEKTYCPFKNCSVLLVNDGGKVVTSSECPSCHRLFCAQCKVPWHAEMNCNEFRKLKRSKIEKDLDTKFLELAKGKMWQKCPKCYMYVQRRSGCEHMLCRCGCQFCYHCGENWNQFGHLCNSRRST 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3352g00015 338 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 76 326 IPR031127 GO:0004842|GO:0016567
Gabi3352g00015 338 SUPERFAMILY RING/U-box 215 267 - -
Gabi3352g00015 338 CDD Rcat_RBR_unk 289 325 - -
Gabi3352g00015 338 ProSiteProfiles TRIAD supradomain profile. 128 338 IPR044066 -
Gabi3352g00015 338 Pfam IBR domain, a half RING-finger domain 284 327 IPR002867 GO:0008270
Gabi3352g00015 338 Pfam IBR domain, a half RING-finger domain 201 262 IPR002867 GO:0008270
Gabi3352g00015 338 SMART ibrneu5 271 332 IPR002867 GO:0008270
Gabi3352g00015 338 SMART ibrneu5 200 262 IPR002867 GO:0008270
Gabi3352g00015 338 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3352g00015 338 SUPERFAMILY RING/U-box 127 213 - -
Gabi3352g00015 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 214 IPR013083 -
Gabi3352g00015 338 ProSiteProfiles Zinc finger RING-type profile. 132 180 IPR001841 -
Gabi3352g00015 338 FunFam RBR-type E3 ubiquitin transferase 127 213 - -
Gabi3352g00015 338 SUPERFAMILY RING/U-box 279 333 - -
Gabi3352g00015 338 ProSitePatterns Zinc finger RING-type signature. 150 159 IPR017907 -
Gabi3352g00015 338 CDD BRcat_RBR_unk 213 265 - -
Gabi3352g00015 338 Gene3D - 260 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3352g00015 Gabi-Chr3352 347006 350131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3352g00015 89 322 C3H Transcription Factor Family AT2G19610 30.189 4.34e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3352g00015 K11975 - vvo:131630288 311.227