Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3352g00012 ATGAAGAAACCAATAGGCCCCAGTATCCAAGAGAGTGGTGCAGGCAATAACAACAATGGCACACGAAGGCACAATCATAAAGATCAAAGTGGCATGAAATATTCATGTGGGGGTGTTTTTACTTTTTTTCTCTTCTCTGGGAAAGGAAAAACATCCTCAGATGCTGTTGAAAGTGATGACAGAAAGAATACACACAAAGTCAGAGGTGGATCATCTTCAACAGATGTATCATCTAATAGTTCGAGGAGTTCATCAAAATGGAAGTTTTCTCATTCTTCAGCAGCATCATCTAGTGCTTCAAGTAGTCAACTTGGAATGGGAAACTTCACCTTTGAGGAAATTTACAAGGCAACAGCAAAATTCTCTATAGATAATAAGATTGGAGAAGGTGGGTTTGGAACAGTATATAAGGGAAAGCTTAATGATGGATCCCTTGTGGCTGTAAAGCGTGCCAACAAGGATGTACATAACAAGAACTTAGCTGAGTTCAAGAATGAAATAAACACCTTGTCAAAAATTGAGCATATGAATCTTGTGAGGTGGTATGGATATTTGGAGCATGGAGATGAAAAGATTATTGTTGTTGAATATGTTAACAATGGAACTCTTCGGGAACATCTTGATGGTATGCGGGGGAAAGAACTAGAAATCGGTGAGCGTCTAGACATAGCAATTGATGTAGCTCATGCAGTTACTTACCTTCATATGTACACAGATCATCCAATTATTCATAGAGACATCAAAGCATCAAATATACTAATCACTGACAAACTAAAGGCCAAAGTGGCAGACTTTGGTTTTGCTAGGCTGGCTGCAGAAGACCCAGATGCAACCCATATTTCAACTCAAATTAAAGGAACAGCTGGCTACGTGGATCCTGATTACATGAGAACACACCATCTCTCTGAAAAGAGTGATGTTTATTCCTTTGGAGTGTTGCTTGTTGAAATGATGACAGGAAGACATCCAGTTGAACCAAAGAGACCCCTCAGTGAGAGAGTTACAATTAGATGGGCAATGCAGATGTTGAAACAAGGAGAAGTTGTGATTGCCATGGATCCAAGGTTGCGGAGAAGTCCAGCCTCAAACAAGGCAGTTCATAAAGTTTTCAAGCTAGCTTACCAATGCCTTGCACCTGTGAGAAGATCACGGCCATCCATGAAGAATTGTGGAGAGGTTTTGTGGGGAATCCGTAAAGATTTTAAAGATAAAGCCTTTTCTCATTCCCCACATGGTGCTCACCATTCTGCAAATTTTCCAGAGAAAGATGCTAGGAAAAATAGACATATGACATTTGGTATTGAAGATAACAAGGGCCATAAATTTGATTCTGCATAA 1338 0.3984 MKKPIGPSIQESGAGNNNNGTRRHNHKDQSGMKYSCGGVFTFFLFSGKGKTSSDAVESDDRKNTHKVRGGSSSTDVSSNSSRSSSKWKFSHSSAASSSASSSQLGMGNFTFEEIYKATAKFSIDNKIGEGGFGTVYKGKLNDGSLVAVKRANKDVHNKNLAEFKNEINTLSKIEHMNLVRWYGYLEHGDEKIIVVEYVNNGTLREHLDGMRGKELEIGERLDIAIDVAHAVTYLHMYTDHPIIHRDIKASNILITDKLKAKVADFGFARLAAEDPDATHISTQIKGTAGYVDPDYMRTHHLSEKSDVYSFGVLLVEMMTGRHPVEPKRPLSERVTIRWAMQMLKQGEVVIAMDPRLRRSPASNKAVHKVFKLAYQCLAPVRRSRPSMKNCGEVLWGIRKDFKDKAFSHSPHGAHHSANFPEKDARKNRHMTFGIEDNKGHKFDSA 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3352g00012 445 Gene3D Transferase(Phosphotransferase) domain 1 198 414 - -
Gabi3352g00012 445 SMART serkin_6 121 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3352g00012 445 Pfam Protein tyrosine and serine/threonine kinase 122 393 IPR001245 GO:0004672|GO:0006468
Gabi3352g00012 445 PANTHER OS01G0750732 PROTEIN 23 400 - -
Gabi3352g00012 445 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 84 197 - -
Gabi3352g00012 445 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 198 408 - -
Gabi3352g00012 445 ProSiteProfiles Protein kinase domain profile. 121 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3352g00012 445 MobiDBLite consensus disorder prediction 49 92 - -
Gabi3352g00012 445 MobiDBLite consensus disorder prediction 53 68 - -
Gabi3352g00012 445 SUPERFAMILY Protein kinase-like (PK-like) 98 398 IPR011009 -
Gabi3352g00012 445 ProSitePatterns Protein kinases ATP-binding region signature. 127 149 IPR017441 GO:0005524
Gabi3352g00012 445 MobiDBLite consensus disorder prediction 1 32 - -
Gabi3352g00012 445 MobiDBLite consensus disorder prediction 69 92 - -
Gabi3352g00012 445 Gene3D Phosphorylase Kinase; domain 1 80 197 - -
Gabi3352g00012 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3352g00012 Gabi-Chr3352 326715 334211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3352g00012 69 437 Trihelix Transcription Factor Family AT1G70460 37.731 1.38e-67 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Gabi3352g00012 PK_Tyr_Ser-Thr 6.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3352g00012 - - gmx:100815871 653.284