Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3352g00010 ATGATGTCGTCGTATTCAAGAAGATCAAGGTATTCTCCTTCTCCTTCTCCATTCAAGCGGTATAGCAGGTCCGTGTCCAGGTCTCTTTCAAGGTCGAGGTCAAGAAGCCGTTCAAGGAGCCCATCAAGAGATGTAGAAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAAAGAACTGGAGAGGCATTTTGCTGCTGAGGGAAAGGTGAAGGATGTACATCTGGTAGTTGATCCATGGACAAGGGAATCCCGTGGGTTTGGGTTTGTGACAATGGAGACACTTGAGGAAGCTGAACGATGCTTAAAGTATCTGAATCGGTCTGTACTTGAAGGGCGTGTCATCACTGTAGAGAAGGCTAGAAGACGACGTGGTCGAACCCCAACACCTGGGAAGTATCTAGGGCTGAGGACTATTCGCGCACGTAGACGCTCCCCAAGCTACTCTCCTCGTCGGTCTCCCGGTTATTCTCCATACAGAAGAAGCTATAGTCGTTCACCATATTCTTCAGATCGTAGTAGGAGTCGTTCTTATTCTCCTGACTACCGACGGAGGAGGTCTTATTCTCCTGAATACCGGCGAAGGAGCTCATACTCTCCATACCACAGCCAGCACAGGTCATATTACGAGAGACGCAGGTCATATTACGATAGACGCAGGTCATATTCTAGGTCTCGCTCCCCTTATAGCAGGTCACCTGTAAGCATGCGTGACAGATCATACTCTCCCTATGACTCGAGATATGACTCACCTGATGATCACTACTACAGAAGGCACCGTTACAGGTCAGTCTCTCAAAGTGTCTCACCCAGGCCAAGGAGAAGGTCAAGAAGGAGCTATTCAAGAAGTGCCTCTCCTGTTCGAAGGAGGAGCTATTCACCTAGTGTTTCCCCCATGCCAAGGAAGAGTTATTCGAGAAGCTCTAAAAGAAGTGCTGGTTATTCGAAACGTAGGCATTCAAGAAGCCCAAGTGTGAGTGTGAGTGCAAGTTCAAGATCAGTATCAAGATCGAATACTCCTAGATCTGCCTCTCCTTCAACTTGA 1062 0.4774 MMSSYSRRSRYSPSPSPFKRYSRSVSRSLSRSRSRSRSRSPSRDVENPGNNLYVTGLSPRITKKELERHFAAEGKVKDVHLVVDPWTRESRGFGFVTMETLEEAERCLKYLNRSVLEGRVITVEKARRRRGRTPTPGKYLGLRTIRARRRSPSYSPRRSPGYSPYRRSYSRSPYSSDRSRSRSYSPDYRRRRSYSPEYRRRSSYSPYHSQHRSYYERRRSYYDRRRSYSRSRSPYSRSPVSMRDRSYSPYDSRYDSPDDHYYRRHRYRSVSQSVSPRPRRRSRRSYSRSASPVRRRSYSPSVSPMPRKSYSRSSKRSAGYSKRRHSRSPSVSVSASSRSVSRSNTPRSASPST 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3352g00010 353 MobiDBLite consensus disorder prediction 182 198 - -
Gabi3352g00010 353 Gene3D - 3 134 IPR012677 -
Gabi3352g00010 353 MobiDBLite consensus disorder prediction 127 353 - -
Gabi3352g00010 353 MobiDBLite consensus disorder prediction 324 353 - -
Gabi3352g00010 353 SUPERFAMILY RNA-binding domain, RBD 40 153 IPR035979 GO:0003676
Gabi3352g00010 353 MobiDBLite consensus disorder prediction 248 266 - -
Gabi3352g00010 353 MobiDBLite consensus disorder prediction 1 29 - -
Gabi3352g00010 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Gabi3352g00010 353 MobiDBLite consensus disorder prediction 165 181 - -
Gabi3352g00010 353 MobiDBLite consensus disorder prediction 291 316 - -
Gabi3352g00010 353 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 36 269 - -
Gabi3352g00010 353 MobiDBLite consensus disorder prediction 1 53 - -
Gabi3352g00010 353 FunFam Serine/arginine-rich splicing factor SR45a 4 134 - -
Gabi3352g00010 353 SMART rrm1_1 51 124 IPR000504 GO:0003723
Gabi3352g00010 353 CDD RRM_SF 52 124 - -
Gabi3352g00010 353 MobiDBLite consensus disorder prediction 211 230 - -
Gabi3352g00010 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3352g00010 Gabi-Chr3352 304925 307798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3352g00010 51 165 Eukaryotic Initiation Factors Gene Family AT2G36660 31.897 3.16e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3352g00010 - - gmx:100808038 219.935