Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3352g00009 ATGATGTCGTCGTATTCAAGAAGATCAAGGTATTCTCCTTCTCCTTCTCCATTCAAGCGGTATAGCAGGTCCGTGTCCAGGTCTCTTTCAAGGTCGAGGTCAAGAAGCCGTTCAAGAGATGTAGAAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAAAGAACTGGAGAGGCATTTTGCTGCTGAGGGAAAGGTGAAGGATGTACATCTGGTAGTTGATCCATGGACAAGGGAATCCCGTGGGTTTGGGTTTGTGACAATGGAGACACTTGAGGAAGCTGAACGATGCTTAAAGTATCTGAATCGGTCTGTACTTGAAGGGCGTGTCATCACTGTAGAGAAGGCTAGAAGACGACGTGGTCGAACCCCAACACCTGGGAAGTATCTAGGGCTGAGGACTATTCGCGCACGTAGACGCTCCCCAAGCTACTCTCCTCGTCGGTCTCCCGGTTATTCTCCATACAGAAGAAGCTATAGTCGTTCACCATATTCTTCAGATCGTAGTAGGAGTCGTTCTTATTCTCCTGACTACCGACGGAGGAGGTCTTATTCTCCTGAATACCGGCGAAGGAGCTCATACTCTCCATACCACAGCCAGCACAGGTCATATTACGAGAGACGCAGGTCATATTACGATAGACGCAGGTCATATTCTAGGTCTCGCTCCCCTTATAGCAGGTCACCTGTAAGCATGCGTGACAGATCATACTCTCCCTATGACTCGAGATATGACTCACCTGATGATCACTACTACAGAAGGCACCGTTACAGGTCAGTCTCTCAAAGTGTCTCACCCAGGCCAAGGAGAAGGTCAAGAAGGAGCTATTCAAGAAGTGCCTCTCCTGTTCGAAGGAGGAGCTATTCACCTAGTGTTTCCCCCATGCCAAGGAAGAGTTATTCGAGAAGCTCTAAAAGAAGTGCTGGTTATTCGAAACGTAGGCATTCAAGAAGCCCAAGTGTGAGTGTGAGTGCAAGTTCAAGATCAGTATCAAGATCGAATACTCCTAGATCTGCCTCTCCTTCAACTTGA 1050 0.4762 MMSSYSRRSRYSPSPSPFKRYSRSVSRSLSRSRSRSRSRDVENPGNNLYVTGLSPRITKKELERHFAAEGKVKDVHLVVDPWTRESRGFGFVTMETLEEAERCLKYLNRSVLEGRVITVEKARRRRGRTPTPGKYLGLRTIRARRRSPSYSPRRSPGYSPYRRSYSRSPYSSDRSRSRSYSPDYRRRRSYSPEYRRRSSYSPYHSQHRSYYERRRSYYDRRRSYSRSRSPYSRSPVSMRDRSYSPYDSRYDSPDDHYYRRHRYRSVSQSVSPRPRRRSRRSYSRSASPVRRRSYSPSVSPMPRKSYSRSSKRSAGYSKRRHSRSPSVSVSASSRSVSRSNTPRSASPST 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3352g00009 349 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Gabi3352g00009 349 MobiDBLite consensus disorder prediction 1 47 - -
Gabi3352g00009 349 MobiDBLite consensus disorder prediction 123 349 - -
Gabi3352g00009 349 MobiDBLite consensus disorder prediction 178 194 - -
Gabi3352g00009 349 SMART rrm1_1 47 120 IPR000504 GO:0003723
Gabi3352g00009 349 MobiDBLite consensus disorder prediction 320 349 - -
Gabi3352g00009 349 MobiDBLite consensus disorder prediction 244 262 - -
Gabi3352g00009 349 SUPERFAMILY RNA-binding domain, RBD 25 135 IPR035979 GO:0003676
Gabi3352g00009 349 MobiDBLite consensus disorder prediction 287 312 - -
Gabi3352g00009 349 MobiDBLite consensus disorder prediction 161 177 - -
Gabi3352g00009 349 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 36 266 - -
Gabi3352g00009 349 MobiDBLite consensus disorder prediction 1 31 - -
Gabi3352g00009 349 FunFam Serine/arginine-rich splicing factor SR45a 4 130 - -
Gabi3352g00009 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 117 IPR000504 GO:0003723
Gabi3352g00009 349 CDD RRM_SF 48 120 - -
Gabi3352g00009 349 Gene3D - 3 130 IPR012677 -
Gabi3352g00009 349 MobiDBLite consensus disorder prediction 207 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3352g00009 Gabi-Chr3352 304924 307798 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3352g00009 47 161 Eukaryotic Initiation Factors Gene Family AT2G36660 31.897 2.79e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3352g00009 - - gmx:100808038 216.468