Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3350g00039 ATGCAGCTTCTTCGCTCCGAGGAAACCGCGTCGGAAATTCGAGACTTTCCCGAGAAATCCGAAGAAAAGAAGACCCCGAGCGAATCTTTGAACCCTGAAATCGATAAAATCGATGAAGGCGTGGCTCTGGACGTGTCGGGAAAGAGCTTGGAGTTTCCGGCGCCGGAGGATGCAGAAGCCTCCGTGGAGAGTTTGTATCTATACAAGAATGTTTACAGTTTGATTCCCAAGTCGATGGGTATCCTTGCGCGGTTGAAAACATTGAAGTTCTTCGGAAACGAGATAAACTTGTTTTCCCCAGAGTTTGGGAACTTGACGGAGTTGGAGTGCTTGCAGATGAAGATATCTTCGCCCGGGATTGGTGGGTTGAACTTGCACGAGCTGGAGGGTTTGAAGGAGCTTGAGCTTTCCAAAGTTCCTCCCAGACCTTCTGCTTTTCCTATTTTGACTGAGATTGCTGCTCTCAGGCGTTTGACCAAGCTTTCTATTTGTCACTTCTCTTTAACATACCTTCCTCCGGAAATTGGATGCTTAAAGAATCTGGAGTATCTTGATCTTTCATTCAATAAAATAAAGACATTGCCCTCAGAGATTAGTTGTTTGAATGGCTTAATATCCATGAAAGTTGCAAATAATAAGTTGGTGGAACTACCGTCAGCTATGACCTCTCTGTCAAGGTTGGAGAGTTTGGACCTGTCAAATAATAGGTTGACTTCATTAGGATCCCTTAAACTTGGGTCGATGCATAGACTTCAGAGCTTAAATCTTCAGTACAATAAGCTGCTCGGCTTTTTTCAAATTCCTGCATGGATATGCTGTAATATGGAAGGAAATGATGGAGGTAGATGCCAAGATGATTGTAGCAGTTCTTCTGTTGAAATGGATGTCTATGAAAGCAGTTTACAGGAAAATGATGAAATCCTTTCTCATGGTCCTCAATGCACCTCATCAGGCATATTGACGAGCTCCTCATCTAGCAGTAGATGTTTTTCAGCCTGGAAGTCAGGTAAACGGTGGAAGCGACGGCATTATTTACAGCAGAAAGCTCGCCAAGAACGCTTGAACAACAGCAGGAAGTGGAAAGGTGTAGATCATGACCAGTTGAGCAAGAAGATTCCCAGAATTCCTGAACCAGGAAAATTGGGTAGCCTTGCTTCTAAAGGTTGCACAGAATCTGTATCAGAAAATAATAAAAGAATATTCTCCAAAGAAGCAGTAAACGACAATTTGATTGATAATGTCAACGATGATGAAGTAATTATGGAAAAACAGTTTCTTCAAAATGATTGCTGCACTGCTGAAAGTAAAGATGAAAAAGATGCATCCTTATGCTCCTTACAGAATGGGCAAAGTGAACAAGATGAAGGGTCTTGTTCGGAAAATTTGAAGTGTATTTCTAAACCAAAGAGGCATTCAAATCGGGTTCTTGATAATCCCAAACCATGCAAGTCTAGAAAACCAATTGGTGATAACTCATTATTGTCTTGCAAGTACAGTAAGATCTCATTTTGTGGCATTGAGGACCATCTATCAGATGGCTTTTATGATGCAGGACGTGATCGGCCATTTATGCCTCTTGAGAGTTATGAGCGAAATCAGTGTCTCGCTTCTCGTGAAGTCATCCTGTTAGACAGAAAAAGCGATGAAGAGTTGGATGCTGTTACGCTCTCTGCTCAGGCATTGGTTTATAATTTGAAGCAGTTAAATGGTTTAAACAGACGGGGAAACCAGGCTGCAGTTGATAACTTGCAGATAGCATCACTGCTTGCACTCTTTGTATCGGATCATTTTGGTGGCAGTGATAGAGGTGCTATTGTAGAAAGGACACGGAAATTTGTATCTGGTTCGAACTATAATAAGCCTTTTGTCTGTACATGCTCAGCTGGAAACAGCACCAGTATAAGTGCTTCCACTGAACCAGTTGTAAACACCATAGAAGATATCACTCTTCCTAAGATCTCTGAAAAATCTCTTGGTTCTATAAAGAAAAGGAGAAGTTCAATTATTGTTCCTATTGGCTCTGTGCAATATGGTGTATGTAGACATAGAGCTCTGCTTTTTAAGTATTTATGTGATCACATGGAACCGCCAGTACCTTGTGAGCTTGTCAGGGGCTACCTGGATTTTTCACCACATGCCTGGAATGTCAATCTGATTAAAAAGGGTGCTACATGGGTTCGAATGCTGGTTGATGCTTGCCGACCTCACGATATAAGAGAGGAGAAAGATCTTGAATACTTTTGCAGGTACATACCTCTTACTCGAACCAAATCCCATCTTTCATCTAGAGGAAGTCTTGGTCCTGATTATTCCTTTCCATCTCTCTCTGCTTGTGAGGAACTTGTGAAAAAAGCTTCGACTACTTTAGTTCGGTGCAAATTTGGATCAGTTGAGGCTGCAGCAAAGGTGCGTACTTTGAAAGTGCTGGGGAGTTCAGCAGACGAAGTTAAATTTTTTGAATATAATTGTTTGGGAGAAGTTAGAATTCTTGGTGCTTTTAAACACCCCTGCATAGTGGAAATGTATGGACACCAAATATCTAGCGAATGGACTCTCTCAGCTGATGGTAAATCTGAGCATCATGTGTTAAGATCTGCAATTTTAATGGAGTATGTGGAAGGAGGCTCCTTAAAAAAATATCTAGAGAATCTGTCAGAAGCTGGTGAAAAGCATGTTCCTGTTGAGTTGGCTTTGTGTATTGCCAGAGATGTCTCGTGTGCTTTGTCGGAGCTGCACTCGAAGCACATAATTCATCGTGACATAAAGAGTGAAAACATTCTGTTTGATTTGGATAGGAAGAGAGACGATGGAACTCCCACTGTGAAGCTCTGTGATTTTGATAGTGCAGTACCACTTAGATCACCTTTACATGCATGCTGTATTGCTCATGTGGGAACACCTCCTCCTTGTGTATGTGTTGGAACACCTCGGTGGATGGCTCCAGAGGTTATGCAGACTATGTATGAAAAAACCGCATATGGAGTGGAAGCTGATATTTGGTCGTTTGGGTGCTTGCTTCTGGAGATGTTGACTCTGCAAATTCCATATTTTGGAGTACCTGATTCACACGTCCATGATAGTCTTCAGATGAGTAAACGACCACAATTAACTGATGAACTGGAAGTATTGAGTTCAATGAATGAACCCACAATGATTCAATCTGGTGAAGAGCTGGGAAAATCAGATGCTGAGGTAGACATGTTGAAATTCCTTGTTGATTTGTTTCATAGGTGTGTGGAAGAAAATCCAAACGAACGTCCTTCAGCTGAAGAAATCCATGAAATGCTGCTTGCACACACAGGCCGCCTACAAGTTCAAGATGTTAGGAAGATTTAG 3336 0.4185 MQLLRSEETASEIRDFPEKSEEKKTPSESLNPEIDKIDEGVALDVSGKSLEFPAPEDAEASVESLYLYKNVYSLIPKSMGILARLKTLKFFGNEINLFSPEFGNLTELECLQMKISSPGIGGLNLHELEGLKELELSKVPPRPSAFPILTEIAALRRLTKLSICHFSLTYLPPEIGCLKNLEYLDLSFNKIKTLPSEISCLNGLISMKVANNKLVELPSAMTSLSRLESLDLSNNRLTSLGSLKLGSMHRLQSLNLQYNKLLGFFQIPAWICCNMEGNDGGRCQDDCSSSSVEMDVYESSLQENDEILSHGPQCTSSGILTSSSSSSRCFSAWKSGKRWKRRHYLQQKARQERLNNSRKWKGVDHDQLSKKIPRIPEPGKLGSLASKGCTESVSENNKRIFSKEAVNDNLIDNVNDDEVIMEKQFLQNDCCTAESKDEKDASLCSLQNGQSEQDEGSCSENLKCISKPKRHSNRVLDNPKPCKSRKPIGDNSLLSCKYSKISFCGIEDHLSDGFYDAGRDRPFMPLESYERNQCLASREVILLDRKSDEELDAVTLSAQALVYNLKQLNGLNRRGNQAAVDNLQIASLLALFVSDHFGGSDRGAIVERTRKFVSGSNYNKPFVCTCSAGNSTSISASTEPVVNTIEDITLPKISEKSLGSIKKRRSSIIVPIGSVQYGVCRHRALLFKYLCDHMEPPVPCELVRGYLDFSPHAWNVNLIKKGATWVRMLVDACRPHDIREEKDLEYFCRYIPLTRTKSHLSSRGSLGPDYSFPSLSACEELVKKASTTLVRCKFGSVEAAAKVRTLKVLGSSADEVKFFEYNCLGEVRILGAFKHPCIVEMYGHQISSEWTLSADGKSEHHVLRSAILMEYVEGGSLKKYLENLSEAGEKHVPVELALCIARDVSCALSELHSKHIIHRDIKSENILFDLDRKRDDGTPTVKLCDFDSAVPLRSPLHACCIAHVGTPPPCVCVGTPRWMAPEVMQTMYEKTAYGVEADIWSFGCLLLEMLTLQIPYFGVPDSHVHDSLQMSKRPQLTDELEVLSSMNEPTMIQSGEELGKSDAEVDMLKFLVDLFHRCVEENPNERPSAEEIHEMLLAHTGRLQVQDVRKI 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3350g00039 1111 Gene3D Ribonuclease Inhibitor 18 290 IPR032675 -
Gabi3350g00039 1111 MobiDBLite consensus disorder prediction 8 37 - -
Gabi3350g00039 1111 ProSiteProfiles Leucine-rich repeat profile. 180 201 IPR001611 GO:0005515
Gabi3350g00039 1111 Pfam Leucine rich repeat 156 214 IPR001611 GO:0005515
Gabi3350g00039 1111 SUPERFAMILY L domain-like 61 272 - -
Gabi3350g00039 1111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Gabi3350g00039 1111 ProSiteProfiles Protein kinase domain profile. 755 1096 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3350g00039 1111 ProSiteProfiles Leucine-rich repeat profile. 226 247 IPR001611 GO:0005515
Gabi3350g00039 1111 SMART LRR_bac_2 224 243 - -
Gabi3350g00039 1111 SMART LRR_bac_2 201 220 - -
Gabi3350g00039 1111 SMART LRR_bac_2 178 197 - -
Gabi3350g00039 1111 Gene3D Transferase(Phosphotransferase) domain 1 776 1109 - -
Gabi3350g00039 1111 FunFam Leucine-rich repeat protein kinase family protein 821 1102 - -
Gabi3350g00039 1111 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 108 1100 - -
Gabi3350g00039 1111 SMART LRR_sd22_2 224 245 - -
Gabi3350g00039 1111 SMART LRR_sd22_2 178 200 - -
Gabi3350g00039 1111 MobiDBLite consensus disorder prediction 1 37 - -
Gabi3350g00039 1111 FunFam Leucine-rich repeat protein kinase family protein 51 294 - -
Gabi3350g00039 1111 SMART serkin_6 779 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3350g00039 1111 SMART LRR_typ_2 224 245 IPR003591 -
Gabi3350g00039 1111 SMART LRR_typ_2 178 201 IPR003591 -
Gabi3350g00039 1111 SMART LRR_typ_2 248 274 IPR003591 -
Gabi3350g00039 1111 SMART LRR_typ_2 82 104 IPR003591 -
Gabi3350g00039 1111 Pfam Protein kinase domain 806 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3350g00039 1111 SUPERFAMILY Protein kinase-like (PK-like) 814 1096 IPR011009 -
Gabi3350g00039 1111 MobiDBLite consensus disorder prediction 360 388 - -
Gabi3350g00039 1111 Pfam Ethylene-responsive protein kinase Le-CTR1 655 731 - -
Gabi3350g00039 1111 PRINTS Leucine-rich repeat signature 181 194 - -
Gabi3350g00039 1111 PRINTS Leucine-rich repeat signature 224 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3350g00039 Gabi-Chr3350 479551 489833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3350g00039 810 1103 MAP Kinase Kinase Kinase AT5G50180 30.100 1.57e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Gabi3350g00039 Pkinase 1.4e-38 CL0016