Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3350g00038 ATGCCAGTGAGGCAGATGAAAGAAAGCTCAGAACAACACCTAGTGATCAAAACCCATTTGCAAAACCCCATGAATCCAGCTAAGAAGGCACCTAAAGCTGCCCAAAATGGCAAAGGTCCACCGCCACAAGAAAATCATAGCCAAATTTCACCTCACCCGAGGAACAAGGGAAGAAGAAGGGGTAGAAGTGGTAGAAAATCTGATCAAGGAGATGTTTTGATGAGACCCAGTTGCAGGCCCTGCACTGTAACAAGTACTGCAAATGGAAATGTTGAAAATGGCTGCATCTCTGGTGACATAGATGTGGGTTTTCCTACTTCAAGCAAGTCTTTGAGCTTTGCCCGTAGGCCTGGTTATGGACAAGTTGGGACAAAATGCGTTGTGAAGGCTAACCATTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAATATGATGTTACTATATCCCCAGAAGTGGCTTCGAGAACAGTAAACAGGTCGATTATAGCTGAACTTGTGAGGCTGTATAAAGAGTCTGACTTGGGGATGAGACTTCCAGCATATGATGGCAGAAAAAGTCTTTACACTGCAGGGCAACTTCCCTTTACCTGGAGAGAGTTTAATGTTAAACTTGTTGATGAAGGGGATGGAGTTAATGGCAGCAAAAGGGAAAGAGAGTATAGGGTGGTGATCAAGTTTGTTGCTCGGGCAAACTTGCACCACTTGGGCCAGTTTTTAGCTGGTAAGCGTGCTGATGCACCACAAGAGGCTATTCAAATTCTTGACATTGTACTAAGAGAACTATCAAATAAGAGGTATTGCCCCATTGGGAGGTCCTTCTTTTCACCTGATATTAGAACGCCACAGCGTCTCGGAGAGGGATTGGAGTCATGGTGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGATATGGCATCTGCTGCGTTCATGGAGCCTCTTCCAGTAGTAGAATTTGTTGGCCAGCTATTAGGAAAGGATGTGTTGTCGAGGCCATTATCGGATGCTGATCGCATTAAGATTAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTAAGAAGAAAATATCGTGTTTCAGGGTTGACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGAGAACTCAACTATGAAGTCAGTAGTTGAATACTTCCAAGAGATGTATGGTTTCACTATTCAAAATACTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAGGCTAACTATTTACCTATGGAGGCCTGCAAAATTGTTGAAGGGCAACGTTATACAAAAAGATTGAATGAGAAGCAAATTACTGCTCTATTGAAAGTTACTTGCCAGAGACCTCGCGATCGGGAAAATGACATTTTACGGACCATTCAACAGAATGCTTACGATCAAGATCCTTATGCAAAGGAGTTTGGGATTAAAATCAGTGAAAAGCTAGCTTCTGTTGAAGCACGAATTCTTCCTGCCCCTTGGCTTAAATATCACGAAAGTGGGAAAGAAAAGAACTGTTTACCCCAGGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACCGTTAGCCGGTGGGCATGCATAAATTTTTCGCGGAGTGTGCAAGATAGCGTTGCTCGCACGTTTTGCAATGAGCTTGCTCAAATGTGTCAAATATCTGGCATGGAATTTAATCCAGAGCCTATTATCCCCATCTACAATGCCAAGCCTGAGCAAGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCAGCGAACAAAACTAAAGGAAAGGATTTAGAGCTTTTGTTAGCAATCTTGCCGGACAATAATGGGTCTCTCTATGGTGATCTAAAGCGTATTTGTGAGACTGACCTTGGTTTAATTTCACAATGCTGTCTGACAAAGCATGTCTTTAAAATCACTAAACAGTACTTGGCTAATGTGTCTCTGAAGATCAATGTTAAGATGGGAGGTAGAAACACTGTTCTTCTTGATGCTGTAAGCTGCAGAATACCATTGGTCAGTGACATACCAACCATAATTTTTGGAGCAGATGTTACCCACCCTGAAAATGGAGAAGACTCTAGCCCCTCCATAGCAGCTGTAGTAGCGTCCCAGGACTGGCCCGAAGTGACAAAATATGCCGGATTAGTGTGCGCTCAAGCTCATAGACAGGAACTTATACAAGATTTGTACAAAACTTGGCATGATCCTGTTCGTGGCACAGTTAGCGGTGGCATGATCCGAGATTTACTGGTTTCCTTTAGAAAGGCAACGGGACAAAAGCCACTACGGATTATATTTTACAGGGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTTTACTTTATGAGTTGGATGCGATCCGGAAGGCATGTGCTTCCTTAGAACCAAACTATCAGCCTCCAGTTACATTCATAGTTGTACAAAAAAGACATCATACTCGGTTATTTGCAAACAACCACAGGGACAGGAACAGTACAGATAAGAGTGGGAATATATTGCCTGGGACTGTTGTTGATACTAAAATCTGTCATCCAACAGAATTTGATTTTTATCTCTGTAGTCATGCCGGCATCCAGGGTACTAGCCGGCCAGCTCATTATCATGTTCTATGGGATGAAAACAACTTTACAGCAGATGGAATTCAGTCTTTGACTAACAATCTTTGTTATACATATGCCAGGTGTACACGCTCCGTATCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCCTTTCGAGCTCGTTTCTATATGGAACCAGATATGCAAGAGAATGGCTCTACGGGAACACGAGTAAATGGAGAGTGTGGTGTCAAGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG 2901 0.4264 MPVRQMKESSEQHLVIKTHLQNPMNPAKKAPKAAQNGKGPPPQENHSQISPHPRNKGRRRGRSGRKSDQGDVLMRPSCRPCTVTSTANGNVENGCISGDIDVGFPTSSKSLSFARRPGYGQVGTKCVVKANHFFAELPDKDLNQYDVTISPEVASRTVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFTWREFNVKLVDEGDGVNGSKREREYRVVIKFVARANLHHLGQFLAGKRADAPQEAIQILDIVLRELSNKRYCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFMEPLPVVEFVGQLLGKDVLSRPLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQNTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTIQQNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCNELAQMCQISGMEFNPEPIIPIYNAKPEQVEKALKHVYHVSANKTKGKDLELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDKSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTGTRVNGECGVKPLPALKENVKRVMFYC 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3350g00038 966 FunFam Argonaute 10 499 672 - -
Gabi3350g00038 966 SMART PAZ_2_a_3 325 457 IPR003100 GO:0005515
Gabi3350g00038 966 Gene3D paz domain 314 439 - -
Gabi3350g00038 966 CDD Piwi_ago-like 479 929 IPR045246 -
Gabi3350g00038 966 Pfam Argonaute linker 1 domain 269 318 IPR014811 -
Gabi3350g00038 966 Gene3D - 499 672 - -
Gabi3350g00038 966 FunFam Protein argonaute-2 314 440 - -
Gabi3350g00038 966 SUPERFAMILY Ribonuclease H-like 601 931 IPR012337 -
Gabi3350g00038 966 SMART Piwi_a_2 609 930 IPR003165 GO:0003676
Gabi3350g00038 966 ProSiteProfiles PAZ domain profile. 321 435 IPR003100 GO:0005515
Gabi3350g00038 966 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 105 931 - -
Gabi3350g00038 966 SMART DUF1785_2 268 320 IPR014811 -
Gabi3350g00038 966 Pfam Piwi domain 610 929 IPR003165 GO:0003676
Gabi3350g00038 966 SUPERFAMILY PAZ domain 315 475 IPR036085 GO:0005515
Gabi3350g00038 966 Gene3D - 678 966 IPR036397 GO:0003676
Gabi3350g00038 966 ProSiteProfiles Piwi domain profile. 609 930 IPR003165 GO:0003676
Gabi3350g00038 966 CDD PAZ_argonaute_like 320 434 - -
Gabi3350g00038 966 MobiDBLite consensus disorder prediction 1 80 - -
Gabi3350g00038 966 Pfam N-terminal domain of argonaute 124 259 IPR032474 -
Gabi3350g00038 966 FunFam protein argonaute 10-like 678 966 - -
Gabi3350g00038 966 Pfam Mid domain of argonaute 518 595 IPR032473 -
Gabi3350g00038 966 Pfam PAZ domain 347 451 IPR003100 GO:0005515
Gabi3350g00038 966 Pfam Argonaute linker 2 domain 461 507 IPR032472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3350g00038 Gabi-Chr3350 450523 462842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3350g00038 1 966 Eukaryotic Initiation Factors Gene Family AT5G43810 82.229 0.0 1664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3350g00038 K11593 - gmx:100816999 1837.39