Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3350g00034 ATGGCCTCTAAAAGCGAAACCGAGAATTCAACCGATACTTCTCCATCATCGCCAAAGAATGTATACAAGGATCCAGATGATGGGCGCCAACGATTTTTGCTTGAATTGGAATTCGTTCAATGCCTTGCTAATCCTACCTACATCCACTATTTGGCTCAGAATCGATATTTTGAGGATGAAGCATTCATTGGGTACTTGAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATCATGTATCCTCATTGCCTCTATTTTCTTGAGCTTCTTCAGAATGCAAATTTTCGTAATGCAATGGCACACCCTAGCAACAAGGAACTGGCACATAGACAACAATTCTACTTCTGGAAGAACTATAGGAACAATCGGTTAAAACACATTTTACCAAGATCACTTCCTGAACCAAGTGCCACTCCTGTACCACCTGCTACTGCTTCAACTCCAGCTCAGCCACCAGTGCCTGCACTGCCACCAGTACCTGCCACAAATGTTGCTGTGACAGCATCATCTACTCAAGCTCCTTCTCCAATGACATATGGTATACCCCCTGGCTCTGGCTCTGCCCTTGCAAAAAATGACATGAGGAATCCTACAGTTGATAGAAGGAAGAGAAAGTGA 627 0.429 MASKSETENSTDTSPSSPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPSNKELAHRQQFYFWKNYRNNRLKHILPRSLPEPSATPVPPATASTPAQPPVPALPPVPATNVAVTASSTQAPSPMTYGIPPGSGSALAKNDMRNPTVDRRKRK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3350g00034 208 MobiDBLite consensus disorder prediction 133 208 - -
Gabi3350g00034 208 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3350g00034 208 Pfam SOH1 30 122 IPR008831 GO:0003712|GO:0006355|GO:0016592
Gabi3350g00034 208 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 1 208 IPR008831 GO:0003712|GO:0006355|GO:0016592
Gabi3350g00034 208 MobiDBLite consensus disorder prediction 166 181 - -
Gabi3350g00034 208 FunFam Mediator of RNA polymerase II transcription subunit 31 18 119 - -
Gabi3350g00034 208 MobiDBLite consensus disorder prediction 137 162 - -
Gabi3350g00034 208 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 17 119 IPR038089 -
Gabi3350g00034 208 MobiDBLite consensus disorder prediction 1 24 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Gabi3350g00034 Med31 1.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3350g00034 K15153 - gmx:100527879 338.576