Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3350g00032 ATGACGGCGGGTACCACTGTTATAAACAGTGACAGTCAGCTAACGTCGCTTCACCGCCGTTTCCCATTCTCTTTCTTACTCTCTCGCTCCCTCACTCACTCTCTCTTCATAACTTACTGCCTTCTGTGCTTACCTTACAGTTCACGCCAAACGCCTGCACTTTCTCTCTCTTACTCCCTCTCTCTCTACCAAGCAACAACCTCTGTAGTCACTGCATTTCTCGTACCTGGTGTTGTTGGTTCTTCTTCCGTTACTGGGTGGAGGCTAGCAATGGTTGATGATAGGTTTGTGCTGCTATTCTATGCCGGCAACCGCAGGTGGAGGAGGTTTCTGCTGTCTCCTGTGGCAATGGTGCTTCTCGTGATGTTCCTTCTCTCACCATTTTCCTTGTCACTCAGTGAAGAAGGACAAACATTGATGACAATCAAGGCTTCCTTCAGCAATATAGCAGACGTTCTGCTTGATTGGGATGACGTGCACAATGATGATTTCTGCTCTTGGCGTGGAGTTTTCTGTGATAATGTTAGCCTTACTGTGGTATCTTTGAATCTGTCGAGTTTGAACCTGGGTGGGGAGATATCACCAGCCATTGGTGATTTAGGAAACTTGCAATCCATAGACCTGCAAGGGAATAAACTAACCGGTCAAATCCCAGATGAAATTGGGAACTGTGCTGCACTTATTCATCTGGATTTGTCTGATAATCAGCTCTATGGTGATATACCTTTCTCCATCTCAAAGCTAAAGCAACTTGAGTTTTTGAATTTGAAGAGTAATCAGTTGACTGGTCCTATCCCTTCAACTTTAACACAAATTCCAAACCTGAAGACTCTTGATCTTGCTCGAAATAGGCTCATTGGAGAGATACCAAGACTCCTCTATTGGAATGAAGTCTTGCAGTACCTAGGGTTGCGAGGGAACATGTTGACTGGAACTTTGTCTCCTGATTTATGTCAATTAACTGGTTTGTGGTATTTTGATGTGAGAGGCAATAATTTGACTGGTACTATACCTGACAGCATTGGGAACTGTACAAGTTTTCAAATCTTGGACATATCATATAATCAAATTACTGGGGAGATTCCCTATAATATTGGATTTCTTCAAGTGGCTACTTTGTCACTTCAAGGAAATAGGCTAACTGGGAAGATTCCAGAAGTGATTGGTTTAATGCAAGCCCTTGCAATTTTGGATTTGAGTGAGAACGAGTTAGTGGGGCCAATCCCTCCTATTTTGGGCAATCTGTCTTTTACTGGCAAGCTATACCTTCATGGAAACAAGCTTACTGGTCCAATACCTCCAGAACTTGGCAATATGTCAAAATTGAGCTACCTGCAATTGAATGACAATCAACTAGTGGGTGAAATTCCTAATGAAATTGGGAAGCTTGAACATCTGTTTGAATTGAATCTTGCGAATAATCATCTTGAAGGATCTATTCCACATAACATAAGCTCCTGCACTGCCTTAAATCAGCTTAATGTGTATGGAAATCAGTTAAACGGATCCATTCCATTGAGCTTCCGCAACCTTCAGAGTTTGACATACTTAAATCTCTCTGCAAACAACTTCAAGGGCAATATACCGGTTGAGTTGGGCCATAGCATAAATCTTGATACGCTGGATTTATCTAGCAATAGTTTTTCTGGGCATATCCCAGCTTCTGTTGGTTATCTAGAGCATCTTTTGACCCTGAACTTGAGTCATAACTACCTTGGTGGTCCCATGCCTGCTGAATTTGGGAATCTCCGAAGCATACAGACTATTGATATGTCGTTCAACAATCTGTCCGGTAGCATTCCTTCGGAAACTGGTCAGCTGCAGAACCTTGTTTCCCTGATTTTGAACAACAACAACCTGCGTGGGAAGATTCCTGATCAACTGACTAATTGTTTCAGTCTTTCCTCTCTGAATTTTTCATATAATAACTTTTCTGGAGTCATTCCTTCTGTGAAGAACTTCTCTCGCTTTTCCGCTGACAGCTTCATTGGAAATCCTTTTTTATGTGGAAATTGGTTAGGATCAATATGTCGTCCTTACGTACCCAAAACTAGAGAAATTTTTTCAAGACTTGCTGTTGTATGTCTCACACTTGGTAGCATCATGTTATTGGCCGTGGTAATTGTTGCTATATATAGATCCAGCCAATCGAAGCAATTAATGAAAGGATCCAGCATAAATGGGCAAGGCATGTGTCCCCCTAAACTTGTAATTCTTCATATGGATTTGGCTATCCACACCTTGGATGATATCATGAGAAATACTGAGAATCTCAATGAGAAATATATCATAGGGTATGGTGCCTCTAGTACTGTATACAAGTGTGTTTTGAAGAATTCCCGACCAATTGCAATTAAGCGATTGTACAACCAGCATCCACACAATTTAGGGGAGTTTGAGACGGAACTTGAAACTATTGGGAGTATTAGACATAGAAACCTTGTCACCTTGCATGGTTATGCCCTTACTCCCCATGGGAATCTCCTTTTCTATGACTACATGGCAAATGGCTCTCTGTGGGATCTTCTTCATGGTCCCTTGAAGGTAAAACTTGATTGGGAAACACGCTTGAGGATTGCTGTTGGTGCTGCTGAAGGACTTGCTTATCTCCATCATGATTGCAACCCTCGAATAGTTCACAGGGACATAAAGTCTTCAAATATTCTGCTGGATGAGAACTTTGAGGCTCACCTCTCTGATTTTGGCACGGCAAAATGCATCTCAACCACAAGAACTCACACATCAACCTATGTTCTTGGAACTATAGGTTACATTGACCCTGAGTATGCCCGAACATCTAGGCTGAATGAAAAATCAGATATATATAGCTTTGGCATTGTTCTGCTAGAGCTACTTACTGGGAAGAAGGCAGTGGACAATGAATCTAACTTGCATCAATTGATATTGTCCAAGGCAGATAACAACACTGTAATGGAGGCTGTGGATCCAGAGGTCTCCATTACCTGCATTGATATGACCCATGTTAAGAAGACCTTTCAGCTTGCTCTGCTATGCACAAAAAGGAACCCTTCTGAGAGGCCTACCATGCATGAAGTTGCCAGGGTACTGATATCACTCCTTCCTGCACCACCCAGTAAAAAAATCCTTGCTGCTCCTGCGAAGACGTTTGATTATGGGCATTTTGTGATTGAGAAGGGACAGCAACAATCCAAAATGGAAGGGCTACCACCTCAGCAGGACAATAATTCATCCAATGCTCAGTGGTTTGTTCACTTTGGGGATGTTATATCCAAGAACACCTTCTGA 3267 0.4221 MTAGTTVINSDSQLTSLHRRFPFSFLLSRSLTHSLFITYCLLCLPYSSRQTPALSLSYSLSLYQATTSVVTAFLVPGVVGSSSVTGWRLAMVDDRFVLLFYAGNRRWRRFLLSPVAMVLLVMFLLSPFSLSLSEEGQTLMTIKASFSNIADVLLDWDDVHNDDFCSWRGVFCDNVSLTVVSLNLSSLNLGGEISPAIGDLGNLQSIDLQGNKLTGQIPDEIGNCAALIHLDLSDNQLYGDIPFSISKLKQLEFLNLKSNQLTGPIPSTLTQIPNLKTLDLARNRLIGEIPRLLYWNEVLQYLGLRGNMLTGTLSPDLCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFQILDISYNQITGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENELVGPIPPILGNLSFTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNQLVGEIPNEIGKLEHLFELNLANNHLEGSIPHNISSCTALNQLNVYGNQLNGSIPLSFRNLQSLTYLNLSANNFKGNIPVELGHSINLDTLDLSSNSFSGHIPASVGYLEHLLTLNLSHNYLGGPMPAEFGNLRSIQTIDMSFNNLSGSIPSETGQLQNLVSLILNNNNLRGKIPDQLTNCFSLSSLNFSYNNFSGVIPSVKNFSRFSADSFIGNPFLCGNWLGSICRPYVPKTREIFSRLAVVCLTLGSIMLLAVVIVAIYRSSQSKQLMKGSSINGQGMCPPKLVILHMDLAIHTLDDIMRNTENLNEKYIIGYGASSTVYKCVLKNSRPIAIKRLYNQHPHNLGEFETELETIGSIRHRNLVTLHGYALTPHGNLLFYDYMANGSLWDLLHGPLKVKLDWETRLRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKCISTTRTHTSTYVLGTIGYIDPEYARTSRLNEKSDIYSFGIVLLELLTGKKAVDNESNLHQLILSKADNNTVMEAVDPEVSITCIDMTHVKKTFQLALLCTKRNPSERPTMHEVARVLISLLPAPPSKKILAAPAKTFDYGHFVIEKGQQQSKMEGLPPQQDNNSSNAQWFVHFGDVISKNTF 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3350g00032 1088 Pfam Leucine rich repeat N-terminal domain 133 173 IPR013210 -
Gabi3350g00032 1088 Pfam Leucine Rich Repeat 274 292 IPR001611 GO:0005515
Gabi3350g00032 1088 Pfam Leucine rich repeat 537 596 IPR001611 GO:0005515
Gabi3350g00032 1088 Pfam Leucine rich repeat 202 261 IPR001611 GO:0005515
Gabi3350g00032 1088 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 407 680 - -
Gabi3350g00032 1088 ProSitePatterns Protein kinases ATP-binding region signature. 764 786 IPR017441 GO:0005524
Gabi3350g00032 1088 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 834 1034 - -
Gabi3350g00032 1088 SUPERFAMILY L domain-like 413 670 - -
Gabi3350g00032 1088 Gene3D Ribonuclease Inhibitor 370 454 IPR032675 -
Gabi3350g00032 1088 SMART LRR_typ_2 200 224 IPR003591 -
Gabi3350g00032 1088 SMART LRR_typ_2 248 271 IPR003591 -
Gabi3350g00032 1088 SMART LRR_typ_2 320 344 IPR003591 -
Gabi3350g00032 1088 SMART LRR_typ_2 463 487 IPR003591 -
Gabi3350g00032 1088 SMART LRR_typ_2 511 535 IPR003591 -
Gabi3350g00032 1088 SMART LRR_typ_2 559 582 IPR003591 -
Gabi3350g00032 1088 SMART LRR_typ_2 272 296 IPR003591 -
Gabi3350g00032 1088 SMART LRR_typ_2 439 462 IPR003591 -
Gabi3350g00032 1088 SMART LRR_typ_2 607 631 IPR003591 -
Gabi3350g00032 1088 Gene3D Ribonuclease Inhibitor 298 369 IPR032675 -
Gabi3350g00032 1088 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 297 406 - -
Gabi3350g00032 1088 ProSiteProfiles Leucine-rich repeat profile. 274 296 IPR001611 GO:0005515
Gabi3350g00032 1088 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 132 296 - -
Gabi3350g00032 1088 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 729 833 - -
Gabi3350g00032 1088 Gene3D Phosphorylase Kinase; domain 1 731 833 - -
Gabi3350g00032 1088 ProSiteProfiles Protein kinase domain profile. 758 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3350g00032 1088 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 271 1024 - -
Gabi3350g00032 1088 Gene3D Transferase(Phosphotransferase) domain 1 834 1033 - -
Gabi3350g00032 1088 SUPERFAMILY L domain-like 135 426 - -
Gabi3350g00032 1088 Pfam Protein kinase domain 760 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3350g00032 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 878 890 IPR008271 GO:0004672|GO:0006468
Gabi3350g00032 1088 SMART serkin_6 758 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3350g00032 1088 SUPERFAMILY Protein kinase-like (PK-like) 739 1023 IPR011009 -
Gabi3350g00032 1088 Gene3D Ribonuclease Inhibitor 553 679 IPR032675 -
Gabi3350g00032 1088 Gene3D Ribonuclease Inhibitor 132 297 IPR032675 -
Gabi3350g00032 1088 Pfam Leucine Rich repeat 343 360 IPR001611 GO:0005515
Gabi3350g00032 1088 Gene3D Ribonuclease Inhibitor 455 552 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3350g00032 Gabi-Chr3350 395359 402427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3350g00032 368 650 Receptor kinase-like Gene Family AT5G07180 39.929 9.54e-45 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Gabi3350g00032 Pkinase 8.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3350g00032 K20718 - gmx:100811653 1699.49