Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3350g00023 ATGCCTTCTCTTTCTCTCTCTGATGCTGATGCCACTCCCAAAGATAAGAAGGAAAAGAAAAACAAGAAGGCCAAGAACCCATCACTTATTGAACCCGAAGTATCCATTATTAGCAAGAAAAGCTCCAAACTTGGAAGCAATCTGAACTCCCCCGATCCCGACGAAGATGGGGTGTCGGGGAAGAAGAAAAAGAAGAAGAAGCGTAAGGCTTCAGATTTAGAGGTGATGATGACCGCCGATGGGGATGAAGAGAATAGTTCTGAGCTGGTTGAGCCCGAAGGTTCAAGAGAGGAGGATAACAAGAAGAAGAAAAAGAAGAAGGAGAAGAAAAAGGCCAAGTTAGAGGAATCTTTGTTGATGGAAGAGGTTGAGAAGAAGGAGGATCCCAATGCCGTTTCGAAATTCAGGATATCGGAGCCGTTGAGGGAGAAGTTGAAGGAAAAGGGAATTGAATCGCTGTTTCCCATTCAGGCTATGACTTTCAATACCATTCTTGATGGTTCTGATTTGGTTGGTCGGGCTCGCACTGGTCAGGGTAAAACTCTGGCCTTCGTGTTGCCCATACTAGAGTCTTTAACAAATGGCCCTGCAAAAGCATCAAGAAAAACTGGCTATGGGAGGCCTCCTAGCGTTCTTGTTCTTTTACCTACTAGGGAATTGGCTTGTCAGGTGCATGCTGATTTTGAAGTTTATGGTGGGGCAATGGGATTGACTTCTTGTTGTTTATATGGTGGAGCTCCATATCAAGGTCAAGAAGTTAAGCTTAAAAGAGGCGTTGATATTGTTATTGGCACTCCAGGCCGCATAAAGGATCATTTAGAGAGGGAAAATATTGACCTGAGCCAACTAAAGTTTCGTGTCCTTGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTAAGTAAAGTAGAAAATGTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGATTGGGTTAAACATATTGCTGCACAATTTCTGAAGACAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCCAGCACCAATGTTAGGCATATTGTTCTTCCCTGTACTAGTTCTGCCAGGTCCCAGCTTATTCCAGACGTTATTTGTTGCTATAGCAGTGGAGGCCGCACTATTATATTTACTGAGACAAAGGAATCCGCTTCTCAGCTTTCAGAGTTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAGGCACAACGTGAGGTTACATTGTCTGGCTTCAGGTCTGGGAAGTTCATGACATTAGTTGCCACAAATGTGGCTGCTCGAGGTTTGGATATTAATGATGTTCAGTTAATTATCCAGTGTGAACCCCCACGGGATGTAGAAGCCTATATCCATCGCTCTGGGCGCACAGGAAGAGCAGGTAATACTGGAGTTGCTGTTATGCTTTATGATCCAAGAAAGTCAACTATATCTAGAATAGAAAGAGAATCGGGTGTAAAATTTGAACATGTATCTGCCCCTCAGCCCGATGATATAGCCAAAGCTCTTGGTGGGGAAGCTGCTGAAATGATTACCCAAGTGTCTGATAGTGTGGTTCCTGCATTCAAGTCTGCTGCTGAGGAGCTATTGAACAACTCTGGTTTATCAGTCGTTGAATTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACTGAGATAAAGAAAAGATCACTTCTCACTTCCATGGAGAACTATGTTACATTACTTCTTGAGATTGGGAAACCTATCTTCACTCCATCTTTTGCGTATGGAGTCTTGAGGAGATTTTTGTCTGAAGAAAAGGTTGAGGCTGTGAAAGGTCTTACCCTCACTGCAGATGGAAATGGTGTTGTTTTTGATGTGCCAGCTGAAGATTTAGATACTTATCTTGCTGGTCAGGAAAATGCCTCGAATGTAAGTTTAGAGCTGTTAAAAGCATTGCCACGTTTGCAACAAAAAGATCAATCAAGAGGAGCCAGATTTGGTGACGGTGGTGGGTTTGGTAATAGAAGTGGGGGGAACAGGTTTTCAGGGGGAAGAGGTGGTGGCAGGAATGGTAGATTTTCAAATGATAGGCTTTCCAATGGTGGTGGGAGAGGTCGTGGCAACTGGGGTGGAAAGAGGTGGTGA 2154 0.4373 MPSLSLSDADATPKDKKEKKNKKAKNPSLIEPEVSIISKKSSKLGSNLNSPDPDEDGVSGKKKKKKKRKASDLEVMMTADGDEENSSELVEPEGSREEDNKKKKKKKEKKKAKLEESLLMEEVEKKEDPNAVSKFRISEPLREKLKEKGIESLFPIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGRPPSVLVLLPTRELACQVHADFEVYGGAMGLTSCCLYGGAPYQGQEVKLKRGVDIVIGTPGRIKDHLERENIDLSQLKFRVLDEADEMLRMGFVEDVELILSKVENVSKVQTLLFSATLPDWVKHIAAQFLKTDKKTADLVGNTKMKASTNVRHIVLPCTSSARSQLIPDVICCYSSGGRTIIFTETKESASQLSELLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSTISRIERESGVKFEHVSAPQPDDIAKALGGEAAEMITQVSDSVVPAFKSAAEELLNNSGLSVVELLAKALAKAVGYTEIKKRSLLTSMENYVTLLLEIGKPIFTPSFAYGVLRRFLSEEKVEAVKGLTLTADGNGVVFDVPAEDLDTYLAGQENASNVSLELLKALPRLQQKDQSRGARFGDGGGFGNRSGGNRFSGGRGGGRNGRFSNDRLSNGGGRGRGNWGGKRW 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3350g00023 717 MobiDBLite consensus disorder prediction 10 27 - -
Gabi3350g00023 717 Pfam Helicase conserved C-terminal domain 380 475 IPR001650 -
Gabi3350g00023 717 CDD SF2_C_DEAD 358 484 - -
Gabi3350g00023 717 CDD GUCT_RH7_like 571 656 - -
Gabi3350g00023 717 SMART ultradead3 149 361 IPR014001 -
Gabi3350g00023 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 487 IPR027417 -
Gabi3350g00023 717 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 343 IPR014001 -
Gabi3350g00023 717 Coils Coil 95 124 - -
Gabi3350g00023 717 MobiDBLite consensus disorder prediction 662 717 - -
Gabi3350g00023 717 Gene3D - 578 653 - -
Gabi3350g00023 717 FunFam DEAD-box ATP-dependent RNA helicase 7 581 653 - -
Gabi3350g00023 717 Pfam DEAD/DEAH box helicase 154 331 IPR011545 GO:0003676|GO:0005524
Gabi3350g00023 717 SUPERFAMILY RNA-binding domain, RBD 568 650 IPR035979 GO:0003676
Gabi3350g00023 717 Gene3D - 78 342 IPR027417 -
Gabi3350g00023 717 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 91 532 - -
Gabi3350g00023 717 SMART helicmild6 394 475 IPR001650 -
Gabi3350g00023 717 MobiDBLite consensus disorder prediction 39 53 - -
Gabi3350g00023 717 MobiDBLite consensus disorder prediction 1 112 - -
Gabi3350g00023 717 Pfam GUCT (NUC152) domain 564 659 IPR012562 GO:0003723|GO:0004386|GO:0005524
Gabi3350g00023 717 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 287 295 IPR000629 -
Gabi3350g00023 717 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 373 514 IPR001650 -
Gabi3350g00023 717 Gene3D - 343 503 IPR027417 -
Gabi3350g00023 717 CDD DEADc 141 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3350g00023 Gabi-Chr3350 281766 286644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3350g00023 115 481 Eukaryotic Initiation Factors Gene Family AT3G19760 29.867 1.10e-40 152