Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3350g00017 ATGCCATCTCGACAACTGTCCACGTCATCACCAGCTCACAACCACCGTCAAAGCCACCACGTTCTAACCCCTCTCCTCGCTTCCACCGCCTCCGCCTGCTCTATCTTCCTCCTCGTTCTTCTCTGCCTCCGCAAGCGCAAACAGAAACGCACCACACCATCTTCCGACTCCGATTCCAACCCTCCTCATCCTTTCTCCTACGCCCTCCTCCGCCGCGCCACCAACTCCTTCTCCACCTGCCTCGGACACGGCGGCTTCGGCCCCGTCTTCTCCGGCTCCCTCCCACCCGCCGGAAAACCCGTCGCCGTTAAGCTCATGGACTCCGCTTCCCTCCAGGGCGAGCGCGAGTTCCACAACGAACTCTTCTTCGCATCCAGGCTCCGCTCCGACCTAGTCGTTCCCGCCATAGGTTTCTCCTCTGACCCCAAACACCGTCGTTTCTTGCTCGTCTACGATCTCATGCACAACGGTAACCTCCACGACGCGCTTTTGCGCCGCAAGTGCCCCGAACTGACGCAGTGGAAGAACCGCTTCGCCATCGTCGTCGACATTGCACGAGGGATTCGTTATCTTCACTCGTGCGACCCCCCTGTCATTCACGGCGATATCAAGCCGAGTAATATTCTTCTGGACAGTTGTTTTTCGGCGAAAATTGGCGATTTTGGACTTGCCCGTTTGAAAACCGAATCTCAGTTTGAAGTGGAAAGTGAAAAGAAGAGAAAGGAGGAGTTGGAGAGTGATGGCACTGAGAGTGTGAATACTGGATTTGAGGAGCAATCATTTGAACATGTTGGTGAGATAGACGTTGCTGTGAAGACGAATGAGGTTGCAGCCTCAGGATCAGGTCTTGTGAATAATGGCAGAGTGAAGGATTATGTGATGGATTGGATTGGGAAGGAGGTGAGCAAGGAAACACCAAAGGGGGAGCGGGTAATAGGTGAATCTGCATCTAGCATGGGAACTGTGGAGAAAAAGAAGAGCAGGAAGAAATTGGAATGGTGGGAATCAATGGATGAGGAAAAGGGTGGTACTGGAGTTTTGAAGATGGAGAAGAGAAGGCCAGCAAGGGAATGGTGGAAGGATGAGTATTCTGACGAGATTGCCAAGAAGAAGAAGAAGAAGAAGAAACAGAAGCAGAGAAAGAGAAAGGGTGAAAACAGTGATGACAATGGCGATGATTGGTGGGAGAGAGATGATAGTAATAAAAACCGTAATAGGAGTGTAGATTCGTGGTTCAGTGGGGAGCTAAGGAGACCTCGCAGGAATAGCTATGATTCTGGTAGTGGTGAAATACACAAGAGTGGTGGTATGAGCAGTACTCCAAGTATGAGGGGAACGATTTTTTATGTTGCTCCTGAGTATAATGGGTATAGTGGAGATGTATCAGATAAGTGCGATGTTTATAGCTTTGGGGTCCTATTACTTGTTATCATTTCTGGGAGGCGTCCACTTCAGGTGACTGGTTCACCATTATCCGAGTTTAAGCGAGCAAATCTTGTGTCTTGGGCACGCCATTGTGGACGGAATGGGAAGCTCCTTGAACTGGTTGATCAGTCAATTCAGTCATTGGATAAAGAGGAGGCTCTTCTATGCATCAGGGTTGCTCTTCTTTGTTTGCTTAAGTCACCTGCTCGTCGTCCTTCCATGAAAGAGGTTGTGGGAATGCTTACTGGGGAGTTGGAGTCACCCCAATTGCCGGTTGAGTACACAAACACATCATCTCGCTTCCCATTCAAGCCTCAGAAAGAATGCCCGTCAGTTCCTGTTATCAACTAA 1776 0.5006 MPSRQLSTSSPAHNHRQSHHVLTPLLASTASACSIFLLVLLCLRKRKQKRTTPSSDSDSNPPHPFSYALLRRATNSFSTCLGHGGFGPVFSGSLPPAGKPVAVKLMDSASLQGEREFHNELFFASRLRSDLVVPAIGFSSDPKHRRFLLVYDLMHNGNLHDALLRRKCPELTQWKNRFAIVVDIARGIRYLHSCDPPVIHGDIKPSNILLDSCFSAKIGDFGLARLKTESQFEVESEKKRKEELESDGTESVNTGFEEQSFEHVGEIDVAVKTNEVAASGSGLVNNGRVKDYVMDWIGKEVSKETPKGERVIGESASSMGTVEKKKSRKKLEWWESMDEEKGGTGVLKMEKRRPAREWWKDEYSDEIAKKKKKKKKQKQRKRKGENSDDNGDDWWERDDSNKNRNRSVDSWFSGELRRPRRNSYDSGSGEIHKSGGMSSTPSMRGTIFYVAPEYNGYSGDVSDKCDVYSFGVLLLVIISGRRPLQVTGSPLSEFKRANLVSWARHCGRNGKLLELVDQSIQSLDKEEALLCIRVALLCLLKSPARRPSMKEVVGMLTGELESPQLPVEYTNTSSRFPFKPQKECPSVPVIN 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3350g00017 591 SMART serkin_6 75 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3350g00017 591 MobiDBLite consensus disorder prediction 419 440 - -
Gabi3350g00017 591 Coils Coil 227 247 - -
Gabi3350g00017 591 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Gabi3350g00017 591 MobiDBLite consensus disorder prediction 382 400 - -
Gabi3350g00017 591 ProSiteProfiles Protein kinase domain profile. 75 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3350g00017 591 MobiDBLite consensus disorder prediction 303 330 - -
Gabi3350g00017 591 Coils Coil 360 380 - -
Gabi3350g00017 591 Gene3D Transferase(Phosphotransferase) domain 1 64 249 - -
Gabi3350g00017 591 SUPERFAMILY Protein kinase-like (PK-like) 59 578 IPR011009 -
Gabi3350g00017 591 Gene3D Transferase(Phosphotransferase) domain 1 422 571 - -
Gabi3350g00017 591 MobiDBLite consensus disorder prediction 369 400 - -
Gabi3350g00017 591 Pfam Protein tyrosine and serine/threonine kinase 78 238 IPR001245 GO:0004672|GO:0006468
Gabi3350g00017 591 PANTHER OS07G0586332 PROTEIN 285 582 IPR044576 -
Gabi3350g00017 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3350g00017 Gabi-Chr3350 199073 201409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3350g00017 433 585 Receptor kinase-like Gene Family AT3G58690 30.818 6.05e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Gabi3350g00017 Pkinase 6.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3350g00017 - - aprc:113872924 796.193