Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3350g00016 ATGTTTCCTTTACAACGCGGCAATGAGCTGGTGATCCAGTTTTCTAATAGTCTCAACCACCAACAACACAAAATCTCCCAAGATCTGATTCTGGATGATTATGATTCTCTGGTTGTCGGTTATTCTGATAAAAAATTGCCTAGTAGCTTTCCAAAGAAAATATTTTATGGCGCAGATACAATTCATGGTAATTCTAACGAATATAAGAAGAAGATGGCTCATAGGGAGATTGAGAGGCAAAGGAGACAAGAAATGACTTCCCTTCATGCCTCGCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCATTATCTGATCAAATGAACGAAGCAGTGAATTACATAAATCACCTGCAGAAGAATATCAAAGAACTGAGTGACAAGAGGGATGAACTGAAGAAACTCTCCAATTCCAAGATCGAAAGCAATGAGATGAAGCATGCATCTACCAGTTTCACTGTCCATCAGAAGAATGGAGCTGTGGGAATTGAAATCACTAGTGGCTTCAGAGAGGAAGGGCTCCCACTTTCAAGATTGATGGAACTACTGTTAAAAGAAGGACTTGAAGTTGTTAGTTGCCTTTCAGCCAAAGTCAATGGCACTTTACTCCACAGTCTGCAGTGTGAGGTTAACAATTCCAACAGTTTGGATCTATCTGAGATGAGAAGGAAATTTTCCAATGTAATTCCATCATTTAGATGTTCTGATTAG 720 0.3972 MFPLQRGNELVIQFSNSLNHQQHKISQDLILDDYDSLVVGYSDKKLPSSFPKKIFYGADTIHGNSNEYKKKMAHREIERQRRQEMTSLHASLRSLLPLEFIKGKRSLSDQMNEAVNYINHLQKNIKELSDKRDELKKLSNSKIESNEMKHASTSFTVHQKNGAVGIEITSGFREEGLPLSRLMELLLKEGLEVVSCLSAKVNGTLLHSLQCEVNNSNSLDLSEMRRKFSNVIPSFRCSD 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3350g00016 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Gabi3350g00016 239 Coils Coil 111 141 - -
Gabi3350g00016 239 Gene3D - 62 152 IPR036638 GO:0046983
Gabi3350g00016 239 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 67 230 - -
Gabi3350g00016 239 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
Gabi3350g00016 239 CDD bHLH_AtORG2_like 70 140 - -
Gabi3350g00016 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 137 IPR036638 GO:0046983
Gabi3350g00016 239 SMART finulus 75 127 IPR011598 GO:0046983
Gabi3350g00016 239 FunFam Transcription factor bHLH126 61 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3350g00016 Gabi-Chr3350 191292 192675 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3350g00016 64 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25400 48.344 1.31e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3350g00016 HLH 9.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3350g00016 - - gmx:100775836 337.806