Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3350g00015 ATGGCCGAAGAGAATCATCATAATGTATTGGCTACTTCGGACAATGATGAGAAGAAGATTATTCGTCGGGAAATTGAAAGAAAAAGGAGGAAGCAAATGTCTATTCTATGTTCATCACTCCGGTCTTCACTCCCTTTTGAACTCATCAAGGGAAAGCGTTCGGTTTCAGAACACATAGGCGAGGCTGCAAATTATGTCCAATTTATGAAGCAGAAGATTGATGCACTCCAAATCAAAAGAGATAGGCTCAAACAGATGGTTAATTTAAGTTTGGTTGAAACTGGAATTGAAAGTTCAGATCATTCAAGTGTACTGGTGAAGTGTGTCAACATCAATCTCATTCCAGGCGGTGTGGAAATAGCACTATGTAGTGGTTTCGAGGAGAACAATTCACGTTTATCAGATTTGATGGAAATATTGCTTCAAGAAGGATGTGATGTTGTTAGCTATGTTTCGACCAAAGTTAATGGGAGAATATTTCATACCATTAAATCTGAGGTGGAGGAGTTGAAACGCCTTGATCTTGCTAGGCTGCAACACAAACTGGATCATGCAATCTTGTTGTCAGGGTAA 573 0.3944 MAEENHHNVLATSDNDEKKIIRREIERKRRKQMSILCSSLRSSLPFELIKGKRSVSEHIGEAANYVQFMKQKIDALQIKRDRLKQMVNLSLVETGIESSDHSSVLVKCVNINLIPGGVEIALCSGFEENNSRLSDLMEILLQEGCDVVSYVSTKVNGRIFHTIKSEVEELKRLDLARLQHKLDHAILLSG 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3350g00015 190 Coils Coil 66 86 - -
Gabi3350g00015 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 89 IPR036638 GO:0046983
Gabi3350g00015 190 Gene3D - 9 93 IPR036638 GO:0046983
Gabi3350g00015 190 Pfam Helix-loop-helix DNA-binding domain 22 69 IPR011598 GO:0046983
Gabi3350g00015 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 69 IPR011598 GO:0046983
Gabi3350g00015 190 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 13 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3350g00015 Gabi-Chr3350 164577 165741 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3350g00015 11 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 34.239 1.41e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3350g00015 - - ccaj:109790384 274.633