Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3350g00014 ATGAATCCTTTACACTCAAGTGATGAGTTGTACTATCAGATTTCATCTGCTAATTATTCCCTACCAATCCTAACAACCCCTGAAGATCAGATCTTTCATGAGCCTCTGATAAATGTCAGTGCTTTTCCTTCTACAAATCAAATCAGAAAGGGCAAGAAGCAAAAACAGTTATCTACTTGGGGAACAGAAGATTATAAGATTACCACAGATGATAACAAGAAGAGGATGCATAGGGAGATCGAAAAACAAAGAAGGCAAGATATGACAAGGTTTTGCACCACCTTTCGATCTCTTCTGCCTCTTGAATATATTAAGGGAAAGCGCTCAACTTCTGATCACATACATGAGGGTACAAATTATATCAGGTATCTTCAGAATAAGGTGAAGCAATTGGAAGCCAAGAAGGAGGAGTTAATGAAGTTGTCAAATTTGAGTCCTGTTGGCCCTGAAAGTGGAAGCTTTACTATCCATCGTTCAACCTATGTCACTGTTCATCCTTGTCCTGGAGGTGTTCAGATTAAGTGTAGTTATAGCTTCACTAAGCATGTGTTTCCTTTGTCAAGAGTGCTAGAAATAGTACTTAAAGAAGGACTAAATGTGGTCAACTGTACTTCCACAAAAACAGATGATCACAGATTCATACACACTATCAGATCAGAGGATCCACATATGATGACTGGGCCTGATTACACTGAACTTCAAAGAAAGCTTATCGAAGCAATATCATCTTCATGTTTGGAGGAGACTGTCTGA 753 0.3878 MNPLHSSDELYYQISSANYSLPILTTPEDQIFHEPLINVSAFPSTNQIRKGKKQKQLSTWGTEDYKITTDDNKKRMHREIEKQRRQDMTRFCTTFRSLLPLEYIKGKRSTSDHIHEGTNYIRYLQNKVKQLEAKKEELMKLSNLSPVGPESGSFTIHRSTYVTVHPCPGGVQIKCSYSFTKHVFPLSRVLEIVLKEGLNVVNCTSTKTDDHRFIHTIRSEDPHMMTGPDYTELQRKLIEAISSSCLEETV 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3350g00014 250 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 54 239 - -
Gabi3350g00014 250 CDD bHLH_AtORG2_like 73 145 - -
Gabi3350g00014 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 142 IPR036638 GO:0046983
Gabi3350g00014 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 124 IPR011598 GO:0046983
Gabi3350g00014 250 FunFam Transcription factor bHLH126 65 151 - -
Gabi3350g00014 250 Coils Coil 121 144 - -
Gabi3350g00014 250 Gene3D - 65 145 IPR036638 GO:0046983
Gabi3350g00014 250 Pfam Helix-loop-helix DNA-binding domain 73 125 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3350g00014 Gabi-Chr3350 158342 159383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3350g00014 59 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 40.541 2.47e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3350g00014 HLH 9.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3350g00014 - - gmx:100803786 332.798