Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3350g00013 ATGCAGTTGAAATGTTTCTGTTGTTTTCTCTCTGAAGAAGAAGAAAAGCAACACGAAATACAGAATGTCAACAACAACAAAAGTAGGGACTATCCATGGGAAATATACACCTTGAAGGAGTTGCTTCGAGCAACAAACAGTTTTCATCAAGATAACAAGATTGGAGAGGGTGGATTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGCGTCGAGATCGCGGTGAAGCGTTTGAAGACTATGACTGCAAAGGCAGAGATGGAGTTTGCTGTAGAAGTGGAAGTACTTGGAAGGGTGAGACATAAGAATTTGTTGGGATTGAGAGGATTCTACGCAGGAGGAGAAGAAAGGTTAATTGTCTATGATTACATGCCTAATCACAGCTTGCTCACCCATTTGCATGGTCAACTTGCTTCGGATTGTTTGCTAGATTGGCCTAAAAGAATGAGCATAGTAATTGGAGCAGCTGAAGGTTTAGCGTATTTGCACCATGAGGCAAATCCTCATATCATTCATAGAGACATAAAGGCAAGCAATGTTCTTTTAGATTCTGAATTTCAAGCCAAGGTTGCTGATTTTGGTTTTGCAAAGCTGATACCAGAAGGTGTAAGCCATCTTACAACAAGGGTCAAAGGCACCCTTGGATATTTGGCACCAGAATATGCCATGTGGGGGAAGGTTTCTGAGAGTTGTGATGTTTATAGCTTTGGGATTTTGCTTTTGGAGATTATCAGTGCCAAGAAACCAATTGAGAAACTCTCTGGCGGTGTAAAAAGGGATATTGTTCAGTGGGTCACACCTTATGTCCAAAAGGGTATCTTCAATCATATTGCAGATCCAAAGTTGAAGGGGAGATTTGATTTGGAGCAATTGAAATCTGTGATCATGATAGCTATAAGGTGCACAGAAAGTAGCCCAGAGAAGAGGCCTAGCATGGAAGAGGTGGCGGAGTGGCTCATGGGTGGTGTGGGGAAGAGAAAAAAGGAGATTGTTTACAAGAATGGAGACCAAGAAAATGATGAAAACTATGAAGAGATTGGAACAATGCAATCCAAGTTGAAAACACCAAGTGATAATGATAGGCTTAAAATAAGATAA 1098 0.4098 MQLKCFCCFLSEEEEKQHEIQNVNNNKSRDYPWEIYTLKELLRATNSFHQDNKIGEGGFGSVYWGRTSKGVEIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGEERLIVYDYMPNHSLLTHLHGQLASDCLLDWPKRMSIVIGAAEGLAYLHHEANPHIIHRDIKASNVLLDSEFQAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKLSGGVKRDIVQWVTPYVQKGIFNHIADPKLKGRFDLEQLKSVIMIAIRCTESSPEKRPSMEEVAEWLMGGVGKRKKEIVYKNGDQENDENYEEIGTMQSKLKTPSDNDRLKIR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3350g00013 365 FunFam PTI1-like tyrosine-protein kinase At3g15890 124 334 - -
Gabi3350g00013 365 Gene3D Phosphorylase Kinase; domain 1 8 123 - -
Gabi3350g00013 365 MobiDBLite consensus disorder prediction 341 365 - -
Gabi3350g00013 365 Gene3D Transferase(Phosphotransferase) domain 1 124 333 - -
Gabi3350g00013 365 SMART serkin_6 48 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3350g00013 365 Pfam Protein kinase domain 48 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3350g00013 365 ProSiteProfiles Protein kinase domain profile. 48 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3350g00013 365 SUPERFAMILY Protein kinase-like (PK-like) 30 321 IPR011009 -
Gabi3350g00013 365 FunFam PTI1-like tyrosine-protein kinase At3g15890 20 123 - -
Gabi3350g00013 365 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 329 - -
Gabi3350g00013 365 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Gabi3350g00013 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3350g00013 Gabi-Chr3350 145304 146993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3350g00013 29 346 Receptor kinase-like Gene Family AT5G45780 42.342 1.15e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Gabi3350g00013 Pkinase 8.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3350g00013 - - gmx:100817283 634.024