Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3350g00004 ATGGGAAGAGGGAGGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTAACCTTCTCAAAGCGCAGGAGTGGTTTGCTGAAGAAAGCCTTCGAGCTATCTGTCCTATGCGATGCTGAAATCGCTCTTATCATCTTCTCTAGCCGTGGCAAGCTTTTTCAGTACAGTAGCACTGACATGAACAGAATAATTGAGAAGTATCGTCAATGTTGCTTCAACATGTCTAAAACTGGCGACTTAGTTGAACATCAGTCACAGAGCTTATACGAGGAGCTTTCGATATTAAGAGTCAAGCATGAAGCTCTTGAGCGGACACAAAGGAATTTTCTAGGAGAAGAACTTGAGCCACTTAGCATGAAACAATTGCAGAGTCTAGAGAAACAACTGGACAAAACGCTTGCACAAGCTCGACAGCACCATATGCAGAAGCTGATGGCACGAGTTAACGAATTACGCGAAACGGTGCACAACCTGGAGGAAGTTAACAAACAATTGGAATCCAAGGTTTTTCCTTTAAATAATCATGAAAAAGATAAATGCACCCAGATTTGTGAAGATTCTACTGATTCGACCCCATTCGTCTACAATAACAATCATATTGGGTTGCACGATGCACAAGCCAATCAATTTGAATCTGGGACAACCATACAATTACAAACAGACTGGTTTCGGCACCAGCAAGCTGCTTCAAAAGGAAAAACAATAGACACAAGAACTGAGCGAGGCCAAAGCAGTCATAACAAGGACAATGGATGGCTGTTTTGA 771 0.4254 MGRGRVVLERIQNKINRQVTFSKRRSGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDMNRIIEKYRQCCFNMSKTGDLVEHQSQSLYEELSILRVKHEALERTQRNFLGEELEPLSMKQLQSLEKQLDKTLAQARQHHMQKLMARVNELRETVHNLEEVNKQLESKVFPLNNHEKDKCTQICEDSTDSTPFVYNNNHIGLHDAQANQFESGTTIQLQTDWFRHQQAASKGKTIDTRTERGQSSHNKDNGWLF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3350g00004 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi3350g00004 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi3350g00004 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi3350g00004 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi3350g00004 256 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3350g00004 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 196 - -
Gabi3350g00004 256 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3350g00004 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi3350g00004 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi3350g00004 256 MobiDBLite consensus disorder prediction 229 256 - -
Gabi3350g00004 256 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Gabi3350g00004 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi3350g00004 256 FunFam MADS-box transcription factor MADS-MC 13 88 - -
Gabi3350g00004 256 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Gabi3350g00004 256 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Gabi3350g00004 256 Coils Coil 121 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3350g00004 Gabi-Chr3350 44124 51589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3350g00004 1 256 MADS-box Gene Family AT2G45650 41.406 2.71e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi3350g00004 K-box 6.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3350g00004 K09264 - gmx:100793681 314.694