Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3350g00003 ATGGGAAGAGGGAGGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTAACCTTCTCAAAGCGCAGGAGTGGTTTGCTGAAGAAAGCCTTCGAGCTATCTGTCCTATGCGATGCTGAAATCGCTCTTATCATCTTCTCTAGCCGTGGCAAGCTTTTTCAGTACAGTAGCACTGACATGAACAGAATAATTGAGAAGTATCGTCAATGTTGCTTCAACATGTCTAAAACTGGCGACTTAGTTGAACATCAGTCACAGAGCTTATACGAGGAGCTTTCGATATTAAGAGTCAAGCATGAAGCTCTTGAGCGGACACAAAGGAATTTTCTAGGAGAAGAACTTGAGCCACTTAGCATGAAACAATTGCAGAGTCTAGAGAAACAACTGGACAAAACGCTTGCACAAGCTCGACAGCACCATATGCAGAAGCTGATGGCACGAGTTAACGAATTACGCGAAACGGTGCACAACCTGGAGGAAGTTAACAAACAATTGGAATCCAAGGAAAAAGATAAATGCACCCAGATTTGTGAAGATTCTACTGATTCGACCCCATTCGTCTACAATAACAATCATATTGGGTTGCACGATGCACAAGCCAATCAATTTGAATCTGGGACAACCATACAATTACAAACAGACTGGTTTCGGCACCAGCAAGCTGCTTCAAAAGGAAAAACAATAGACACAAGAACTGAGCGAGGCCAAAGCAGTCATAACAAGGACAATGGATGGCTGTTTTGA 750 0.432 MGRGRVVLERIQNKINRQVTFSKRRSGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDMNRIIEKYRQCCFNMSKTGDLVEHQSQSLYEELSILRVKHEALERTQRNFLGEELEPLSMKQLQSLEKQLDKTLAQARQHHMQKLMARVNELRETVHNLEEVNKQLESKEKDKCTQICEDSTDSTPFVYNNNHIGLHDAQANQFESGTTIQLQTDWFRHQQAASKGKTIDTRTERGQSSHNKDNGWLF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3350g00003 249 Coils Coil 121 173 - -
Gabi3350g00003 249 MobiDBLite consensus disorder prediction 222 249 - -
Gabi3350g00003 249 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Gabi3350g00003 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi3350g00003 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 191 - -
Gabi3350g00003 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi3350g00003 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi3350g00003 249 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3350g00003 249 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Gabi3350g00003 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi3350g00003 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi3350g00003 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi3350g00003 249 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Gabi3350g00003 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi3350g00003 249 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3350g00003 249 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3350g00003 Gabi-Chr3350 44124 51589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3350g00003 1 249 MADS-box Gene Family AT2G45650 40.784 2.12e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi3350g00003 K-box 3.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3350g00003 K09264 - gmx:100793681 321.627