Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3350g00001 ATGGTTAAGGATTGGTATTGGGCAGGAAGGTCCTCCAAGAGAGGTGAAGGAGCTGAAACAGAAATCCCTTCTGGTTGCATGTGTGTTGTCTTTCAGGCTTTTGATTTTCATCCATTTAACTTTTCCATAAACCAGCAACAATCCTCTTTCAAGTCTTCCTCTCGAATCCCACAAGACCAGTGTGTCCCCAAAGGAGCTGAAGCACCCAGGAATAGCTTGGAATCAGAGGATGGTACAGTGTCATCTATCTCAAAAGAAGACAATTTAAACATTCCGAAGAATATACGAATCAAAACCAGTGGAACCACAAGATCAAGAAGTTTTAATGATTTTTCCTCAGAAATTAGTGGCTCTCCAGGGACCAAGACACCGACTTTGGTTGCAAGATTAATGGGTCTTGATCTTCTTCCTGATTCACATTCTTCCTCATCTCTTTCCACTCCAAACCGACAAGGCCATCCACATCAACACCACAAGAGACCAAGGCAACACATCCAAATAATAAAGCACAGAAACAGCACAGATAGTGACAATGTAGCCATTCGCTCATTGCCTGAGACTCCTAGAATTTCTTCCGCAAGAAGATCAGATGTTGAGCATAGACTATCTCTCCAAATCAACAAGGAAAACATGGGCTTTGGTGAGGATTTGGAGGTTCCTCGGCTTTCATTTTCAAAAAGGAAATATGATGAGAACAATAGCAGAAGTCCAAGCCACTATGCCAGGCAAATTATTAAACATGTTAAAGAAAGTGTAAGCAGGAAAGTTGGGCTTGACATAACCAACACTGTCAAAAACAGAGAGCAAGGAAGAGAAGAATTTGTTGGCCAATTCAAAATCAAGAAACCTCCCAAGACATCAGTGAAATCATTAGATGAATCCAGCCCAGGAAAGCACTCAAACCAATCTTACTCCCCAAGACTCAGCAGATTCATTGATACCAAAGACAAACCAAGTACAAAACCATCACCAATTACCCCAAAAGATCAAAACACACACCCAGTACTAAAACCACCATCACCACCACCTGTAATCAACATTGAAACACAGCTTTCAAGAGTTTCAACAAAACCAAAGCCTCAAGCATTGCCCGAGAAAGAGTTGCAGAACCAAAAATCAGTCCCAAAATGCAAGAAAACCACCCATGAAAAAGTGAGTTCACGGCTTAACAAGCCTCCACAGGCATCAATCAGAAACAAGCAAGATGAGTCATTTATTATCCGTCCCCCATCAGCCGCCAGAGCCAATGACAACAAAACCAAAAGCAAGAGAACTCATCCACTTTCAACCAATCTTCTCAATAACCTCAACACGGTTCCAAATCTTCTCCCTCTCAAGACAGGCCCTTCTCCTCCACCAACCAAAATTCCTCAAAAACAGTTACTGGTATCAGATGATAGCCAAGAAGCAAAACACAGCACACAGTTATTTAGTTGTTCGCGCCAGACGTACAAACAAGAAGTGACGCACACACTCGCCACCCGAGGAACCAACGATGAAGACAAATCTAACGTTTCCTTCACCACCATCGGAGCAGAAGATGAAGGGCCGGAATTTCAGTACATCACAACCATTCTAAGCCGTACTGGAGTACACAAAGCCACAGTACCCCATCTCAATTTTCAATGGTTCTCTCCTACCCATCCATTGGACCCTTCAGTTTTTCACCTTCTTGAGCACTGCCCAACATCCAATCCCTTTGTTTCTTTCCCCGACAACAATAAAGATGGCAACTTTACGCAGAAAAGCCATCTGGGTCCACGTTGCAACCGTAGATTACTGTTCGATTTGGTCGATGAAGTGTTGTCGGAGATTCTTGTCCGGCCAAAGTGTTACCGTGGGTTGTTGTTGGAGACGGTGTGGAAGAGGGTTCGGAGTTTTCCACGTGCGAAATGCGAGGTTCAGGAAGACATTGATGGGTTGATAGAGATGGAGGACATGCAGGAGAAGATGAAGGAAGAAAGAGAAGAAGGGTTGGTGGCGGAGATCGAACGGAACATATTGGAGTCGTTGGTGCATGAAACGTTTACCGTTATGGTTGGTGGCGTGGTGGAAGGGTAG 2061 0.4396 MVKDWYWAGRSSKRGEGAETEIPSGCMCVVFQAFDFHPFNFSINQQQSSFKSSSRIPQDQCVPKGAEAPRNSLESEDGTVSSISKEDNLNIPKNIRIKTSGTTRSRSFNDFSSEISGSPGTKTPTLVARLMGLDLLPDSHSSSSLSTPNRQGHPHQHHKRPRQHIQIIKHRNSTDSDNVAIRSLPETPRISSARRSDVEHRLSLQINKENMGFGEDLEVPRLSFSKRKYDENNSRSPSHYARQIIKHVKESVSRKVGLDITNTVKNREQGREEFVGQFKIKKPPKTSVKSLDESSPGKHSNQSYSPRLSRFIDTKDKPSTKPSPITPKDQNTHPVLKPPSPPPVINIETQLSRVSTKPKPQALPEKELQNQKSVPKCKKTTHEKVSSRLNKPPQASIRNKQDESFIIRPPSAARANDNKTKSKRTHPLSTNLLNNLNTVPNLLPLKTGPSPPPTKIPQKQLLVSDDSQEAKHSTQLFSCSRQTYKQEVTHTLATRGTNDEDKSNVSFTTIGAEDEGPEFQYITTILSRTGVHKATVPHLNFQWFSPTHPLDPSVFHLLEHCPTSNPFVSFPDNNKDGNFTQKSHLGPRCNRRLLFDLVDEVLSEILVRPKCYRGLLLETVWKRVRSFPRAKCEVQEDIDGLIEMEDMQEKMKEEREEGLVAEIERNILESLVHETFTVMVGGVVEG 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3350g00001 686 Pfam Domain of unknown function (DUF4378) 518 674 IPR025486 -
Gabi3350g00001 686 Coils Coil 644 664 - -
Gabi3350g00001 686 MobiDBLite consensus disorder prediction 387 401 - -
Gabi3350g00001 686 Pfam DUF761-associated sequence motif 112 142 IPR032795 -
Gabi3350g00001 686 MobiDBLite consensus disorder prediction 103 123 - -
Gabi3350g00001 686 MobiDBLite consensus disorder prediction 137 151 - -
Gabi3350g00001 686 MobiDBLite consensus disorder prediction 274 431 - -
Gabi3350g00001 686 MobiDBLite consensus disorder prediction 137 163 - -
Gabi3350g00001 686 MobiDBLite consensus disorder prediction 103 124 - -
Gabi3350g00001 686 MobiDBLite consensus disorder prediction 371 386 - -
Gabi3350g00001 686 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 1 682 - -
Gabi3350g00001 686 MobiDBLite consensus disorder prediction 289 309 - -
Gabi3350g00001 686 MobiDBLite consensus disorder prediction 50 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3350g00001 Gabi-Chr3350 20120 22625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3350g00001 95 677 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 35.545 9.05e-61 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3350g00001 - - gmx:102659931 868.226