Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi334g00006 ATGGAGAACGACGCATTCATAGATCAAAACTTTGTCGACAATGAACAAGAAGAAATCTCTGATTCCTTTGTTTGCTGCGTTTGTCTGGATGTATTGTACAAGCCTATTGTGCTATCTTGTGGTCACATATGCTGTTTCTGGTGCGTCCATAAATCAATGAATTGTCTGCGCGAGTCTCAATGCCCAATTTGTAGGAATCAATATTATCACTTTCCAACAGTCTGCAAAATGCTTCACTTTTTGCTTCTTAAGATCTATCCTCTTGCTTACAAGAGAAGAGAAAATCAAACTCTTGAGGAAGAAAAGACAACAGGCTTCTACTCCCCTCAACTTGATCCTGATAAATGGGGATCAGAAGCTAAATTTGGTCATTCTGGCAGCCCTTCATCCTCCTCTACTGTAAATCTGGTTTCCAACTCATGCAATGTGGGAACTTCTGAGTGTATCGAGCAATCAGGGGCCACCACCCATGAAGGAGATGAAGGAACCATCTATTCTGAACACTCTTCTGATGGAGAACCTGTAAATGTAATTATTGGGACTCCTGTTGAAGGAAAAAAATTGCCTCAGGATGATCTTTATCTACAACAGAAAATATTAGTTGCAGATGTGATGTGTACATTGTGCAAGCAAATGCTATTTCGTCCTGTAGTTCTTAATTGTGGTCATGCATTCTGCGAAACTTGTGTCAGCAACTTGGCTGATGAGATGCTTAGATGTCAAGTTTGTCGAAGTCCACATCCAAGAGGATTTCCAAAAGTGTGCTTGGAGTTTGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGCACGACGAAGAGATGCTGTTGAACTAAGGGAAATCAAAGTCAATCCTGAGACCTCTTCTTCTTGTTCATTGGATAATGGTAACAAAGAAGAAAATACAGAATGGTGGTCTGATCCTGAGTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGTGGGATGTTTCCAATCATTGGAGATAGATACAGATGCATTGACTGTAAGGAGAAGATGGGTTTCGATCTTTGTGGTGATTGCTATAACACCCGCTCCAAGCTTCCAGGCCGATTTAATCAACAACACACCTCAGAGCACAGATTCAAGCTTGTACAACACAACATTATGCGTAACATAATGTTGAGACTGGTCACGGGACAGTTAGGGGACAGTTCTATGGACAGTGAGTCTTTTGGAAATTTAGAATTTGCATCCGAAGGGACCCCTTTGTTTGATGATGGAGATGATAACCAGAATGATTCTGAAGACCCCAATTGA 1284 0.4073 MENDAFIDQNFVDNEQEEISDSFVCCVCLDVLYKPIVLSCGHICCFWCVHKSMNCLRESQCPICRNQYYHFPTVCKMLHFLLLKIYPLAYKRRENQTLEEEKTTGFYSPQLDPDKWGSEAKFGHSGSPSSSSTVNLVSNSCNVGTSECIEQSGATTHEGDEGTIYSEHSSDGEPVNVIIGTPVEGKKLPQDDLYLQQKILVADVMCTLCKQMLFRPVVLNCGHAFCETCVSNLADEMLRCQVCRSPHPRGFPKVCLEFDHFLEEQFPEEYARRRDAVELREIKVNPETSSSCSLDNGNKEENTEWWSDPESKVHIGVGCDFCGMFPIIGDRYRCIDCKEKMGFDLCGDCYNTRSKLPGRFNQQHTSEHRFKLVQHNIMRNIMLRLVTGQLGDSSMDSESFGNLEFASEGTPLFDDGDDNQNDSEDPN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi334g00006 427 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
Gabi334g00006 427 SUPERFAMILY RING/U-box 17 75 - -
Gabi334g00006 427 Pfam Zinc finger, C3HC4 type (RING finger) 24 67 - -
Gabi334g00006 427 Pfam Zinc finger, C3HC4 type (RING finger) 203 246 - -
Gabi334g00006 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 292 IPR013083 -
Gabi334g00006 427 FunFam E3 ubiquitin-protein ligase PRT1 16 111 - -
Gabi334g00006 427 Gene3D - 307 374 IPR043145 -
Gabi334g00006 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 106 IPR013083 -
Gabi334g00006 427 MobiDBLite consensus disorder prediction 405 427 - -
Gabi334g00006 427 Pfam Zinc finger, ZZ type 315 354 IPR000433 GO:0008270
Gabi334g00006 427 PANTHER UNCHARACTERIZED 15 393 - -
Gabi334g00006 427 FunFam E3 ubiquitin-protein ligase PRT1 193 289 - -
Gabi334g00006 427 ProSiteProfiles Zinc finger ZZ-type profile. 314 378 IPR000433 GO:0008270
Gabi334g00006 427 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Gabi334g00006 427 SMART ring_2 25 64 IPR001841 -
Gabi334g00006 427 SMART ring_2 206 243 IPR001841 -
Gabi334g00006 427 ProSiteProfiles Zinc finger RING-type profile. 206 244 IPR001841 -
Gabi334g00006 427 FunFam E3 ubiquitin-protein ligase PRT1 308 373 - -
Gabi334g00006 427 SUPERFAMILY RING/U-box 200 247 - -
Gabi334g00006 427 SUPERFAMILY RING/U-box 307 373 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi334g00006 10 65 C3H Transcription Factor Family AT1G74990 36.842 5.04e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi334g00006 - - gmx:100782681 691.804