Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi334g00005 ATGAAGTCCACTATGGCTCAGGCTCAGAGTAATTGGGAAGCTGATAAAATGCTTGACGTTTATATTCATGATTATTTTGTGAAAAGAAAATTACTTGTCACTGCAAAAGCTTTTATGCAAGAAGGAAAAGTTTCCACAGATCCCGTAGCAATTGATGCACCTGGGGGATTTCTTTATGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGCCTGCTGCAGCTTACATTGAGACCCAGCAAACGAAGGCCAGAGAACAACAATTTCAAATGCAGCAATTGCAACTAATGCAACAGCGCAGTGCACAGTTTCAGCGAAGAGATCCTAATCACCCTGCACTTGGTGGTTCCTTAAATGGCATGAACTCTGAAGGAATGCTGGGACAGCCGCCAGCTACTGTTTTGGCCATGAAAATGTATGAAGAACGAATGAAACACCCTCATTCAATGGATTCAGAGGCATCTCCAACTCTTATTGATGCCAATAGGATGGCCCTTCTCAAATCAGCAACAAGTCATCAAGGTCAGTTGGTTCATGGTAATTCAGGGAATATGTCTACTGCATTGCAGCAAATTCAGGGGAGGACTCCTTTGACCACTGACATCAAAGGAGAAGTTAACATAGGTGCCACTCCAAAGAGTTTGCCTATGGATGCATCAGTTTATCGACAAGCAATTTTACAATCAAAGTCTGGGCTAGGCAGTCCAGGATTAAATCAAGGAGTTACAAGTCTTCCACTGAAGGGCTGGCCTCTAACTGGAATTGATCAACTAAGACCTAGTTTGGGTGTACAAGTTCAGAAGCCTAATTTGACAACCCAAAACCAATATCTTTTGGCATCACAACAACAACAGGTCTTGGCACAGGCTCAGGCACAAAATAACCTTGGAAATTCTACTAATTATGGTGATATGGATCCACGCAGACTTTGTGGTCTTCCTCGAGGTAGTTTAAGTGCAAAGGATGGTCAGTCTACCAGGAATGATGGATCTATTTGCTCCCAAATACAGTCAGGTTCACCTAAGATGAAGATGACCCAGTCGCAACATTCATTATCTCAGCAGCAGGAGCAATTGCAGCAGCAGCAACTGCAGCAGAATACCAGAAAAAGAAAACAACATTCTTCTTCTGGAGCTGCCAATAGCACTGGTACTGGAAACACTGTGGGTCCTTCACCTAGTTCACCACCATCGACGCACACACCTGGTGATGGATTAAATACAACAAGCAGCATGCAGCATGTTAACAGTGTGCAAAAGAACATTATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCGGCAAATTTGCTGGAGGACATGGAACGATTTGGAGATGTTGGTGCTTTAGATGATAATGTGGAATCCTTTCTATCAAATGATGGAGGAGATGGTGGGAATCTCTATGGAACAATAAAACAGAGTCCGGCTGAGCAACAAAAAGAGTCTTCAAAAGGCTTCACCTTTGCTGAATTTAGTTGCATAAGGACAAGGAACAGCACAGTTACTTGCTGTCACTTTTCCTCAGATGGAAAGTTGCTTGCCAGTGCTGGAGATGATATGAAGGTTGTCCTCTGGAACATGGACACTTTACAGACAGAGAGCACTCCTGAAGAACACAAATCAGCTATTTCAGATGTCCGTTTTAGACCAAATTCATCTCAGTTTGCGACAGCCTCATTTGATAAATCTGTGCGGTTATGGGATGCAGCCAATCCAAGCTATTGTGTGCAAGAATATAGTGGGCACAGTTCAGCTGTAAGGTCTCTTGATTTCCACCCTAAGAAGACTGATCTTTTCTGCTTCTGCGATAGTGAAAATGAAATTCGGTATTGGAACATTACTTCATCCTCCTGCACCCATATATTAAAGGGAGGTAGAGCACAAGTGAGATTTCAGCCTAGACTGGGACATGTACTGGCAGCAGCTTCTGATAAAGTAGTTTCGATTTTTGATGTTGAAACTGACAGACAAATTTACTCACTCCAGGGTCATCCTGATCCGGTGAACTATATTTGCTGGGATGCGAATGGAGATCACTTGACATCTGTGAGTCAAAGTATGGTGAAGATTTGGAGGTTGGCTTCAGGAGAATGCATTAAGGAGCTGAGCTCCAGCGAGAACCAGTTTTATTCCTGTGTTTTTCATCCAAGTTATTCATCTTTATTGGTGATTGGAGGGATATCGTCCTTAGAGCTGTGGAACATAGCTGAGAACAGAAGCATGACAATTTCTGCACACGAGAATATAATATCTGCTTTGGCTCAGTCTCCTGTCACTGGAATGGTTGCCTCTGCTAGTCATGACAGCTGCGTAAAGTTGTGGAAATAA 2361 0.4307 MKSTMAQAQSNWEADKMLDVYIHDYFVKRKLLVTAKAFMQEGKVSTDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEPAAAYIETQQTKAREQQFQMQQLQLMQQRSAQFQRRDPNHPALGGSLNGMNSEGMLGQPPATVLAMKMYEERMKHPHSMDSEASPTLIDANRMALLKSATSHQGQLVHGNSGNMSTALQQIQGRTPLTTDIKGEVNIGATPKSLPMDASVYRQAILQSKSGLGSPGLNQGVTSLPLKGWPLTGIDQLRPSLGVQVQKPNLTTQNQYLLASQQQQVLAQAQAQNNLGNSTNYGDMDPRRLCGLPRGSLSAKDGQSTRNDGSICSQIQSGSPKMKMTQSQHSLSQQQEQLQQQQLQQNTRKRKQHSSSGAANSTGTGNTVGPSPSSPPSTHTPGDGLNTTSSMQHVNSVQKNIMMYGTEATGGLASSANLLEDMERFGDVGALDDNVESFLSNDGGDGGNLYGTIKQSPAEQQKESSKGFTFAEFSCIRTRNSTVTCCHFSSDGKLLASAGDDMKVVLWNMDTLQTESTPEEHKSAISDVRFRPNSSQFATASFDKSVRLWDAANPSYCVQEYSGHSSAVRSLDFHPKKTDLFCFCDSENEIRYWNITSSSCTHILKGGRAQVRFQPRLGHVLAAASDKVVSIFDVETDRQIYSLQGHPDPVNYICWDANGDHLTSVSQSMVKIWRLASGECIKELSSSENQFYSCVFHPSYSSLLVIGGISSLELWNIAENRSMTISAHENIISALAQSPVTGMVASASHDSCVKLWK 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi334g00005 786 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Gabi334g00005 786 CDD WD40 512 786 - -
Gabi334g00005 786 SUPERFAMILY WD40 repeat-like 503 786 IPR036322 GO:0005515
Gabi334g00005 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 632 IPR001680 GO:0005515
Gabi334g00005 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 505 540 - -
Gabi334g00005 786 Gene3D - 479 638 IPR015943 GO:0005515
Gabi334g00005 786 Pfam LisH 16 42 IPR006594 GO:0005515
Gabi334g00005 786 MobiDBLite consensus disorder prediction 327 419 - -
Gabi334g00005 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 579 IPR001680 GO:0005515
Gabi334g00005 786 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 786 IPR044716 GO:0003714
Gabi334g00005 786 Coils Coil 353 373 - -
Gabi334g00005 786 SMART Lish 14 46 IPR006594 GO:0005515
Gabi334g00005 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 754 786 - -
Gabi334g00005 786 SMART WD40_4 540 579 IPR001680 GO:0005515
Gabi334g00005 786 SMART WD40_4 706 745 IPR001680 GO:0005515
Gabi334g00005 786 SMART WD40_4 665 703 IPR001680 GO:0005515
Gabi334g00005 786 SMART WD40_4 626 662 IPR001680 GO:0005515
Gabi334g00005 786 SMART WD40_4 501 537 IPR001680 GO:0005515
Gabi334g00005 786 SMART WD40_4 747 786 IPR001680 GO:0005515
Gabi334g00005 786 SMART WD40_4 583 623 IPR001680 GO:0005515
Gabi334g00005 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 546 IPR001680 GO:0005515
Gabi334g00005 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 579 - -
Gabi334g00005 786 Gene3D - 639 786 IPR015943 GO:0005515
Gabi334g00005 786 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Gabi334g00005 786 MobiDBLite consensus disorder prediction 305 419 - -
Gabi334g00005 786 Pfam WD domain, G-beta repeat 586 623 IPR001680 GO:0005515
Gabi334g00005 786 Pfam WD domain, G-beta repeat 668 702 IPR001680 GO:0005515
Gabi334g00005 786 Pfam WD domain, G-beta repeat 509 537 IPR001680 GO:0005515
Gabi334g00005 786 Pfam WD domain, G-beta repeat 752 786 IPR001680 GO:0005515
Gabi334g00005 786 Pfam WD domain, G-beta repeat 545 579 IPR001680 GO:0005515
Gabi334g00005 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 754 786 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi334g00005 Gabi-Chr334 36248 48612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi334g00005 523 771 U-box Gene Family AT2G33340 27.237 1.86e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gabi334g00005 WD40 0.047 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi334g00005 - - cave:132165278 1204.89