Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi334g00004 ATGAAGTCCACTATGGCTCAGGCTCAGAGTAATTGGGAAGCTGATAAAATGCTTGACGTTTATATTCATGATTATTTTGTGAAAAGAAAATTACTTGTCACTGCAAAAGCTTTTATGCAAGAAGGAAAAGTTTCCACAGATCCCGTAGCAATTGATGCACCTGGGGGATTTCTTTATGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGCCTGCTGCAGCTTACATTGAGACCCAGCAAACGAAGGCCAGAGAACAACAATTTCAAATGCAGCAATTGCAACTAATGCAACAGCGCAGTGCACAGTTTCAGCGAAGAGATCCTAATCACCCTGCACTTGGTGGTTCCTTAAATGGCATGAACTCTGAAGGAATGCTGGGACAGCCGCCAGCTACTGTTTTGGCCATGAAAATGTATGAAGAACGAATGAAACACCCTCATTCAATGGATTCAGAGGCATCTCCAACTCTTATTGATGCCAATAGGATGGCCCTTCTCAAATCAGCAACAAGTCATCAAGGTCAGTTGGTTCATGGTAATTCAGGGAATATGTCTACTGCATTGCAGCAAATTCAGGGGAGGACTCCTTTGACCACTGACATCAAAGGAGAAGTTAACATAGGTGCCACTCCAAAGAGTTTGCCTATGGATGCATCAGTTTATCGACAAGCAATTTTACAATCAAAGTCTGGGCTAGGCAGTCCAGGATTAAATCAAGGAGTTACAAGTCTTCCACTGAAGGGCTGGCCTCTAACTGGAATTGATCAACTAAGACCTAGTTTGGGTGTACAAGTTCAGAAGCCTAATTTGACAACCCAAAACCAATATCTTTTGGCATCACAACAACAACAGGTCTTGGCACAGGCTCAGGCACAAAATAACCTTGGAAATTCTACTAATTATGGTGATATGGATCCACGCAGACTTTGTGGTCTTCCTCGAGGTAGTTTAAGTGCAAAGGATGGTCAGTCTACCAGGAATGATGGATCTATTTGCTCCCAAATACAGTCAGGTTCACCTAAGATGAAGATGACCCAGTCGCAACATTCATTATCTCAGCAGCAGGAGCAATTGCAGCAGCAGCAACTGCAGCAGAATACCAGAAAAAGAAAACAACATTCTTCTTCTGGAGCTGCCAATAGCACTGGTACTGGAAACACTGTGGGTCCTTCACCTAGTTCACCACCATCGACGCACACACCTGGTGATGGATTAAATACAACAAGCAGCATGCAGCATGTTAACAGTGTGCAAAAGAACATTATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCGGCAAATTTGCTGCAGGAGGACATGGAACGATTTGGAGATGTTGGTGCTTTAGATGATAATGTGGAATCCTTTCTATCAAATGATGGAGGAGATGGTGGGAATCTCTATGGAACAATAAAACAGAGTCCGGCTGAGCAACAAAAAGAGTCTTCAAAAGGCTTCACCTTTGCTGAATTTAGTTGCATAAGGACAAGGAACAGCACAGTTACTTGCTGTCACTTTTCCTCAGATGGAAAGTTGCTTGCCAGTGCTGGAGATGATATGAAGGTTGTCCTCTGGAACATGGACACTTTACAGACAGAGAGCACTCCTGAAGAACACAAATCAGCTATTTCAGATGTCCGTTTTAGACCAAATTCATCTCAGTTTGCGACAGCCTCATTTGATAAATCTGTGCGGTTATGGGATGCAGCCAATCCAAGCTATTGTGTGCAAGAATATAGTGGGCACAGTTCAGCTGTAAGGTCTCTTGATTTCCACCCTAAGAAGACTGATCTTTTCTGCTTCTGCGATAGTGAAAATGAAATTCGGTATTGGAACATTACTTCATCCTCCTGCACCCATATATTAAAGGGAGGTAGAGCACAAGTGAGATTTCAGCCTAGACTGGGACATGTACTGGCAGCAGCTTCTGATAAAGTAGTTTCGATTTTTGATGTTGAAACTGACAGACAAATTTACTCACTCCAGGGTCATCCTGATCCGGTGAACTATATTTGCTGGGATGCGAATGGAGATCACTTGACATCTGTGAGTCAAAGTATGGTGAAGATTTGGAGGTTGGCTTCAGGAGAATGCATTAAGGAGCTGAGCTCCAGCGAGAACCAGTTTTATTCCTGTGTTTTTCATCCAAGTTATTCATCTTTATTGGTGATTGGAGGGATATCGTCCTTAGAGCTGTGGAACATAGCTGAGAACAGAAGCATGACAATTTCTGCACACGAGAATATAATATCTGCTTTGGCTCAGTCTCCTGTCACTGGAATGGTTGCCTCTGCTAGTCATGACAGCTGCGTAAAGTTGTGGAAATAA 2364 0.431 MKSTMAQAQSNWEADKMLDVYIHDYFVKRKLLVTAKAFMQEGKVSTDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEPAAAYIETQQTKAREQQFQMQQLQLMQQRSAQFQRRDPNHPALGGSLNGMNSEGMLGQPPATVLAMKMYEERMKHPHSMDSEASPTLIDANRMALLKSATSHQGQLVHGNSGNMSTALQQIQGRTPLTTDIKGEVNIGATPKSLPMDASVYRQAILQSKSGLGSPGLNQGVTSLPLKGWPLTGIDQLRPSLGVQVQKPNLTTQNQYLLASQQQQVLAQAQAQNNLGNSTNYGDMDPRRLCGLPRGSLSAKDGQSTRNDGSICSQIQSGSPKMKMTQSQHSLSQQQEQLQQQQLQQNTRKRKQHSSSGAANSTGTGNTVGPSPSSPPSTHTPGDGLNTTSSMQHVNSVQKNIMMYGTEATGGLASSANLLQEDMERFGDVGALDDNVESFLSNDGGDGGNLYGTIKQSPAEQQKESSKGFTFAEFSCIRTRNSTVTCCHFSSDGKLLASAGDDMKVVLWNMDTLQTESTPEEHKSAISDVRFRPNSSQFATASFDKSVRLWDAANPSYCVQEYSGHSSAVRSLDFHPKKTDLFCFCDSENEIRYWNITSSSCTHILKGGRAQVRFQPRLGHVLAAASDKVVSIFDVETDRQIYSLQGHPDPVNYICWDANGDHLTSVSQSMVKIWRLASGECIKELSSSENQFYSCVFHPSYSSLLVIGGISSLELWNIAENRSMTISAHENIISALAQSPVTGMVASASHDSCVKLWK 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi334g00004 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 506 547 IPR001680 GO:0005515
Gabi334g00004 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 548 580 - -
Gabi334g00004 787 Pfam WD domain, G-beta repeat 546 580 IPR001680 GO:0005515
Gabi334g00004 787 Pfam WD domain, G-beta repeat 669 703 IPR001680 GO:0005515
Gabi334g00004 787 Pfam WD domain, G-beta repeat 510 538 IPR001680 GO:0005515
Gabi334g00004 787 Pfam WD domain, G-beta repeat 587 624 IPR001680 GO:0005515
Gabi334g00004 787 Pfam WD domain, G-beta repeat 753 787 IPR001680 GO:0005515
Gabi334g00004 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 548 580 IPR001680 GO:0005515
Gabi334g00004 787 Pfam LisH 16 42 IPR006594 GO:0005515
Gabi334g00004 787 CDD WD40 513 787 - -
Gabi334g00004 787 MobiDBLite consensus disorder prediction 327 419 - -
Gabi334g00004 787 ProSitePatterns Trp-Asp (WD) repeats signature. 525 539 IPR019775 -
Gabi334g00004 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 506 541 - -
Gabi334g00004 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 755 787 - -
Gabi334g00004 787 SUPERFAMILY WD40 repeat-like 504 787 IPR036322 GO:0005515
Gabi334g00004 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 591 633 IPR001680 GO:0005515
Gabi334g00004 787 Coils Coil 353 373 - -
Gabi334g00004 787 SMART Lish 14 46 IPR006594 GO:0005515
Gabi334g00004 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 755 787 IPR001680 GO:0005515
Gabi334g00004 787 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 787 IPR044716 GO:0003714
Gabi334g00004 787 SMART WD40_4 541 580 IPR001680 GO:0005515
Gabi334g00004 787 SMART WD40_4 707 746 IPR001680 GO:0005515
Gabi334g00004 787 SMART WD40_4 502 538 IPR001680 GO:0005515
Gabi334g00004 787 SMART WD40_4 666 704 IPR001680 GO:0005515
Gabi334g00004 787 SMART WD40_4 627 663 IPR001680 GO:0005515
Gabi334g00004 787 SMART WD40_4 584 624 IPR001680 GO:0005515
Gabi334g00004 787 SMART WD40_4 748 787 IPR001680 GO:0005515
Gabi334g00004 787 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Gabi334g00004 787 MobiDBLite consensus disorder prediction 305 419 - -
Gabi334g00004 787 Gene3D - 640 787 IPR015943 GO:0005515
Gabi334g00004 787 Gene3D - 480 639 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi334g00004 Gabi-Chr334 36248 48612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi334g00004 524 772 U-box Gene Family AT2G33340 27.237 1.83e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gabi334g00004 WD40 0.047 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi334g00004 - - cave:132165278 1200.27