Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi334g00002 ATGAAGTCCACTATGGCTCAGGCTCAGAGTAATTGGGAAGCTGATAAAATGCTTGACGTTTATATTCATGATTATTTTGTGAAAAGAAAATTACTTGTCACTGCAAAAGCTTTTATGCAAGAAGGAAAAGTTTCCACAGATCCCGTAGCAATTGATGCACCTGGGGGATTTCTTTATGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGCCTGCTGCAGCTTACATTGAGACCCAGCAAACGAAGGCCAGAGAACAACAATTTCAAATGCAGCAATTGCAACTAATGCAACAGCGCAGTGCACAGTTTCAGCGAAGAGATCCTAATCACCCTGCACTTGGTGGTTCCTTAAATGGCATGAACTCTGAAGGAATGCTGGGACAGCCGCCAGCTACTGTTTTGGCCATGAAAATGTATGAAGAACGAATGAAACACCCTCATTCAATGGATTCAGAGGCATCTCCAACTCTTATTGATGCCAATAGGATGGCCCTTCTCAAATCAGCAACAAGTCATCAAGGTCAGTTGGTTCATGGTAATTCAGGGAATATGTCTACTGCATTGCAGCAAATTCAGGGGAGGACTCCTTTGACCACTGACATCAAAGGAGAAGTTAACATAGGTGCCACTCCAAAGAGTTTGCCTATGGATGCATCAGTTTATCGACAAGCAATTTTACAATCAAAGTCTGGGCTAGGCAGTCCAGGATTAAATCAAGGAGTTACAAGTCTTCCACTGAAGGGCTGGCCTCTAACTGGAATTGATCAACTAAGACCTAGTTTGGGTGTACAAGTTCAGAAGCCTAATTTGACAACCCAAAACCAATATCTTTTGGCATCACAACAACAACAGGTCTTGGCACAGGCTCAGGCACAAAATAACCTTGGAAATTCTACTAATTATGGTGATATGGATCCACGCAGACTTTGTGGTCTTCCTCGAGGTAGTTTAAGTGCAAAGGATGGTCAGTCTACCAGGAATGATGGATCTATTTGCTCCCAAATACAGTCAGGTTCACCTAAGCAGATGAAGATGACCCAGTCGCAACATTCATTATCTCAGCAGCAGGAGCAATTGCAGCAGCAGCAACTGCAGCAGAATACCAGAAAAAGAAAACAACATTCTTCTTCTGGAGCTGCCAATAGCACTGGTACTGGAAACACTGTGGGTCCTTCACCTAGTTCACCACCATCGACGCACACACCTGGTGATGGATTAAATACAACAAGCAGCATGCAGCATGTTAACAGTGTGCAAAAGAACATTATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCGGCAAATTTGCTGCAGGAGGACATGGAACGATTTGGAGATGTTGGTGCTTTAGATGATAATGTGGAATCCTTTCTATCAAATGATGGAGGAGATGGTGGGAATCTCTATGGAACAATAAAACAGAGTCCGGCTGAGCAACAAAAAGAGTCTTCAAAAGGCTTCACCTTTGCTGAATTTAGTTGCATAAGGACAAGGAACAGCACAGTTACTTGCTGTCACTTTTCCTCAGATGGAAAGTTGCTTGCCAGTGCTGGAGATGATATGAAGGTTGTCCTCTGGAACATGGACACTTTACAGACAGAGAGCACTCCTGAAGAACACAAATCAGCTATTTCAGATGTCCGTTTTAGACCAAATTCATCTCAGTTTGCGACAGCCTCATTTGATAAATCTGTGCGGTTATGGGATGCAGCCAATCCAAGCTATTGTGTGCAAGAATATAGTGGGCACAGTTCAGCTGTAAGGTCTCTTGATTTCCACCCTAAGAAGACTGATCTTTTCTGCTTCTGCGATAGTGAAAATGAAATTCGGTATTGGAACATTACTTCATCCTCCTGCACCCATATATTAAAGGGAGGTAGAGCACAAGTGAGATTTCAGCCTAGACTGGGACATGTACTGGCAGCAGCTTCTGATAAAGTAGTTTCGATTTTTGATGTTGAAACTGACAGACAAATTTACTCACTCCAGGGTCATCCTGATCCGGTGAACTATATTTGCTGGGATGCGAATGGAGATCACTTGACATCTGTGAGTCAAAGTATGGTGAAGATTTGGAGGTTGGCTTCAGGAGAATGCATTAAGGAGCTGAGCTCCAGCGAGAACCAGTTTTATTCCTGTGTTTTTCATCCAAGTTATTCATCTTTATTGGTGATTGGAGGGATATCGTCCTTAGAGCTGTGGAACATAGCTGAGAACAGAAGCATGACAATTTCTGCACACGAGAATATAATATCTGCTTTGGCTCAGTCTCCTGTCACTGGAATGGTTGCCTCTGCTAGTCATGACAGCTGCGTAAAGTTGTGGAAATAA 2367 0.4313 MKSTMAQAQSNWEADKMLDVYIHDYFVKRKLLVTAKAFMQEGKVSTDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEPAAAYIETQQTKAREQQFQMQQLQLMQQRSAQFQRRDPNHPALGGSLNGMNSEGMLGQPPATVLAMKMYEERMKHPHSMDSEASPTLIDANRMALLKSATSHQGQLVHGNSGNMSTALQQIQGRTPLTTDIKGEVNIGATPKSLPMDASVYRQAILQSKSGLGSPGLNQGVTSLPLKGWPLTGIDQLRPSLGVQVQKPNLTTQNQYLLASQQQQVLAQAQAQNNLGNSTNYGDMDPRRLCGLPRGSLSAKDGQSTRNDGSICSQIQSGSPKQMKMTQSQHSLSQQQEQLQQQQLQQNTRKRKQHSSSGAANSTGTGNTVGPSPSSPPSTHTPGDGLNTTSSMQHVNSVQKNIMMYGTEATGGLASSANLLQEDMERFGDVGALDDNVESFLSNDGGDGGNLYGTIKQSPAEQQKESSKGFTFAEFSCIRTRNSTVTCCHFSSDGKLLASAGDDMKVVLWNMDTLQTESTPEEHKSAISDVRFRPNSSQFATASFDKSVRLWDAANPSYCVQEYSGHSSAVRSLDFHPKKTDLFCFCDSENEIRYWNITSSSCTHILKGGRAQVRFQPRLGHVLAAASDKVVSIFDVETDRQIYSLQGHPDPVNYICWDANGDHLTSVSQSMVKIWRLASGECIKELSSSENQFYSCVFHPSYSSLLVIGGISSLELWNIAENRSMTISAHENIISALAQSPVTGMVASASHDSCVKLWK 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi334g00002 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 549 581 IPR001680 GO:0005515
Gabi334g00002 788 SUPERFAMILY WD40 repeat-like 505 788 IPR036322 GO:0005515
Gabi334g00002 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 756 788 IPR001680 GO:0005515
Gabi334g00002 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 756 788 - -
Gabi334g00002 788 Pfam LisH 16 42 IPR006594 GO:0005515
Gabi334g00002 788 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 788 IPR044716 GO:0003714
Gabi334g00002 788 Coils Coil 354 374 - -
Gabi334g00002 788 Gene3D - 641 788 IPR015943 GO:0005515
Gabi334g00002 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 548 IPR001680 GO:0005515
Gabi334g00002 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 549 581 - -
Gabi334g00002 788 MobiDBLite consensus disorder prediction 305 420 - -
Gabi334g00002 788 Pfam WD domain, G-beta repeat 754 788 IPR001680 GO:0005515
Gabi334g00002 788 Pfam WD domain, G-beta repeat 547 581 IPR001680 GO:0005515
Gabi334g00002 788 Pfam WD domain, G-beta repeat 511 539 IPR001680 GO:0005515
Gabi334g00002 788 Pfam WD domain, G-beta repeat 588 625 IPR001680 GO:0005515
Gabi334g00002 788 Pfam WD domain, G-beta repeat 670 704 IPR001680 GO:0005515
Gabi334g00002 788 CDD WD40 514 788 - -
Gabi334g00002 788 SMART Lish 14 46 IPR006594 GO:0005515
Gabi334g00002 788 SMART WD40_4 542 581 IPR001680 GO:0005515
Gabi334g00002 788 SMART WD40_4 708 747 IPR001680 GO:0005515
Gabi334g00002 788 SMART WD40_4 503 539 IPR001680 GO:0005515
Gabi334g00002 788 SMART WD40_4 585 625 IPR001680 GO:0005515
Gabi334g00002 788 SMART WD40_4 628 664 IPR001680 GO:0005515
Gabi334g00002 788 SMART WD40_4 667 705 IPR001680 GO:0005515
Gabi334g00002 788 SMART WD40_4 749 788 IPR001680 GO:0005515
Gabi334g00002 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 634 IPR001680 GO:0005515
Gabi334g00002 788 ProSitePatterns Trp-Asp (WD) repeats signature. 526 540 IPR019775 -
Gabi334g00002 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 507 542 - -
Gabi334g00002 788 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Gabi334g00002 788 Gene3D - 481 640 IPR015943 GO:0005515
Gabi334g00002 788 MobiDBLite consensus disorder prediction 327 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi334g00002 Gabi-Chr334 36247 48613 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi334g00002 525 773 U-box Gene Family AT2G33340 27.237 2.02e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gabi334g00002 WD40 0.047 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi334g00002 - - gmx:100799686 1201.81