Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3349g00002 ATGATATATAGTGGACATTTGTGTGAAATAAAGGAAGTTAAGGAAGTCTCTCATAATCAAACATCAAAAGAGTGCCTCAAAAAACTAAATCAGGGTGAGATAGCTTTGGCATTCAGAGATTTATTTAGGAAGTTATGGGCTCCTAAAGCAAGTCTCGTGGCACCAAGAACTTTCAAATCAAAGCTTGCTAGATTTGCACCTCAATTTAGTGGATTTAATCAGCATGATTCCCAAGAGCTTCTTGCTTTTTTATTGGATGGACTTGATGAAGATCTGAATCATGTAAAATGA 291 0.3574 MIYSGHLCEIKEVKEVSHNQTSKECLKKLNQGEIALAFRDLFRKLWAPKASLVAPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLDEDLNHVK 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3349g00002 96 SUPERFAMILY Cysteine proteinases 27 95 IPR038765 -
Gabi3349g00002 96 Gene3D Cysteine proteinases 6 96 - -
Gabi3349g00002 96 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 96 IPR028889 -
Gabi3349g00002 96 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 91 - -
Gabi3349g00002 96 Pfam Ubiquitin carboxyl-terminal hydrolase 11 95 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3349g00002 Gabi-Chr3349 43136 44393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3349g00002 5 36 MAP Kinase Kinase Kinase AT1G53570 68.750 2.75e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3349g00002 - K21343 cpap:110810693 117.472