Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3348g00065 ATGTCTCTGTCGCCGGACCATTCCGCCGCTAGTAGCTTGTTGTGCGGCGAAGACGTAGGCGATGTGATCACCGACAACCTGTCGCCACCTCTTCCGGCATCACTTCCTCCGGCGTTCGATGAAGCGGAGATCGCCGGACTCATGCACGCAGAGACCCACCACATACCGGAAAAAGATTATCTCCGGCGCTGCCGCGACCGATTCATAGACATCACTGCACGCTTAGACGCCATCAACTGGATCTTAAAGGTGCACGCATTCTATCAGTTCCGGCCAGTAACGGCGTTTCTCTCCGTTAACTACTTGGACCGTTTCCTGTCATGCTCTTCTCTTCCGCGACCAAGTGGGTGGGCGTTTCAGCTGCTTTCAGTGGCTTGTTTGTCTCTAGCGGCGAAAATGGAGGAGCCTCAAGTGCCGCTATTGCTCGACCTGCAATTGTTCCAACCCCGGTTCGTTTTCGAACCAAAGACGGTTCAGAGAATGGAGCTTCGAGTCATGGCCAATCTCAAATGGAGACTGCGTTCTGTCACCCCCTTCGATTACCTTGATTATTTCATCTCCAAGCTCCCTTCTTCTTCTTCTTCTTCTTCTGATTCTGAATCCATGAACTGGTTCATTTCCACAGCCTCAGACCTCATTCTCAGCACCACTCGAGTGATTGACTTCTTGGGGTTTGCGCCGTCCACCGTGGCAGCCGCCGCCGTGCTCTGCTCAGCTGGCCACACCCATGAAGCCAACGGCCAATTGCCACTGTCTTTTCACGACAGAGTAAACAAAGAAATGGTGAGATGCTGTCACCAACTAATGGAGGAGTACGTGGTGGACACGTGTCCCGCATCTCGTCCTAAAGGTAGGAGAGCCGAGCCGGCGCCGCCATCAAGCCCCGTCGGCGTGCTCGACGCCGCCACCTGTGGGAGCTGCGACACTCGTTCCGAGAGAAACGAAAATGGCTCAAGAGTAGGCCAAGCTGAGCCGCCAAACAGCAAGCGGCTGCGATCCTCTGCTCCGGATGTACAGCAGCGGTAG 1026 0.5507 MSLSPDHSAASSLLCGEDVGDVITDNLSPPLPASLPPAFDEAEIAGLMHAETHHIPEKDYLRRCRDRFIDITARLDAINWILKVHAFYQFRPVTAFLSVNYLDRFLSCSSLPRPSGWAFQLLSVACLSLAAKMEEPQVPLLLDLQLFQPRFVFEPKTVQRMELRVMANLKWRLRSVTPFDYLDYFISKLPSSSSSSSDSESMNWFISTASDLILSTTRVIDFLGFAPSTVAAAAVLCSAGHTHEANGQLPLSFHDRVNKEMVRCCHQLMEEYVVDTCPASRPKGRRAEPAPPSSPVGVLDAATCGSCDTRSERNENGSRVGQAEPPNSKRLRSSAPDVQQR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3348g00065 341 SMART Cyclin_C_2 176 307 IPR004367 -
Gabi3348g00065 341 CDD CYCLIN_AtCycD-like_rpt2 176 269 - -
Gabi3348g00065 341 MobiDBLite consensus disorder prediction 278 341 - -
Gabi3348g00065 341 MobiDBLite consensus disorder prediction 318 341 - -
Gabi3348g00065 341 CDD CYCLIN_AtCycD-like_rpt1 73 171 - -
Gabi3348g00065 341 SMART cyclin_7 79 167 IPR013763 -
Gabi3348g00065 341 SUPERFAMILY Cyclin-like 40 173 IPR036915 -
Gabi3348g00065 341 Gene3D - 47 267 - -
Gabi3348g00065 341 FunFam D6-type cyclin 171 267 - -
Gabi3348g00065 341 ProSitePatterns Cyclins signature. 74 105 IPR006671 -
Gabi3348g00065 341 Gene3D - 57 174 - -
Gabi3348g00065 341 Pfam Cyclin, C-terminal domain 176 273 IPR004367 -
Gabi3348g00065 341 FunFam D2/4-type cyclin 57 170 - -
Gabi3348g00065 341 PANTHER CYCLINS 50 273 IPR039361 -
Gabi3348g00065 341 Pfam Cyclin, N-terminal domain 47 173 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3348g00065 Gabi-Chr3348 502284 503896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3348g00065 1 283 Core Cell Cycle Gene Families AT1G70210 41.096 3.00e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3348g00065 K18810 - gmx:100776178 454.136