LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3348g00062	ATGGCCAGTTTTGCAGGAACAACACAAAAGTGCATGGCTTGTGACAAAACCGTTTACCTTGTTGAAAAGCTAACCGCAGATGGCCGTATCTATCATAAGGCCTGCTTCCGATGCCACCATTGCCGGAATACCCTTAAGCTCGGCAACTTCTGTTCTTTTGAGGGGGTGCTCTACTGCAGACCTCACTATGATCAACTCTTCAAGCGAACTGGTAGCCTGGACAAAAGCTTCGAAGGAACACCCAAAATTCAGAAACCAGAAAGACAGAACACTGAAAATGAGAATGCCAAGGTACTCGCAAACGTGTTCTTGGGCACCAGAGACAAATGTGTGGTTTGCAATAAGACTGTCTATCCCACTGAGAAGGTTACGATTAATAGGAATCCCTACCACAAGAGCTGCTTCAAATGTACCTATGGAGGTTGTACTATAAGCTCATCTAACTTTGTTACACATGAGGGAAAACTCTACTGCAAACATCATCACATTCAACTTTTCAAAGAGAAAGGGAATTACAGCCAACTCGAGAATGACCAAGACAACAAGCATAGTATGGCTGACAACATCGCGTCCACGGGAATTCCTGCTTAA	591	0.4433	MASFAGTTQKCMACDKTVYLVEKLTADGRIYHKACFRCHHCRNTLKLGNFCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKIQKPERQNTENENAKVLANVFLGTRDKCVVCNKTVYPTEKVTINRNPYHKSCFKCTYGGCTISSSNFVTHEGKLYCKHHHIQLFKEKGNYSQLENDQDNKHSMADNIASTGIPA	196

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3348g00062	196	Pfam	LIM domain	11	65	IPR001781	-
	Gabi3348g00062	196	Pfam	LIM domain	110	165	IPR001781	-
	Gabi3348g00062	196	CDD	LIM1_SF3	7	69	-	-
	Gabi3348g00062	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	36	-	-
	Gabi3348g00062	196	ProSiteProfiles	LIM domain profile.	108	168	IPR001781	-
	Gabi3348g00062	196	SMART	lim_4	10	62	IPR001781	-
	Gabi3348g00062	196	SMART	lim_4	109	161	IPR001781	-
	Gabi3348g00062	196	ProSiteProfiles	LIM domain profile.	9	69	IPR001781	-
	Gabi3348g00062	196	FunFam	LIM domain and actin-binding 1	104	174	-	-
	Gabi3348g00062	196	PANTHER	OS06G0237300 PROTEIN	2	94	-	-
	Gabi3348g00062	196	ProSitePatterns	LIM zinc-binding domain signature.	11	45	IPR001781	-
	Gabi3348g00062	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	102	135	-	-
	Gabi3348g00062	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	136	175	-	-
	Gabi3348g00062	196	Gene3D	Cysteine Rich Protein	105	174	-	-
	Gabi3348g00062	196	Gene3D	Cysteine Rich Protein	5	75	-	-
	Gabi3348g00062	196	FunFam	LIM domain and actin-binding 1	5	75	-	-
	Gabi3348g00062	196	MobiDBLite	consensus disorder prediction	175	196	-	-
	Gabi3348g00062	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	37	77	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3348g00062	Gabi-Chr3348	454673	456277	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Gabi3348g00062		LIM	9.6e-11	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3348g00062	K09377		-	gmx:100306027	345.895