Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3348g00053 ATGGATCCTGCTGAGCAAATTTCTGAAGAATGGAGTTCTCTTAGTGGATTGTACACTGCTGAGGAAGCTGATTTTATGAGCCAGTTCCTTAGTAACAGCTCAATCCCTGAGAACTTGTATGGAAATTTCAATTTGGGAATTCCATCTGCATTATGGCCTGGCCATGAATCCACAATAGTGAGTGTGACTGGCAGCAACAACAGCTCATATTTTCCAGCAAATGCTGATAATAGTAATACTATTTTTATTCCTTTTTCACAAGGAAGTAGCTTCACTGCTGATGATAGTAGCAATATATTTCCTACTACAAGTGGTGAAAACTGTTTCTTGAATGATTCAGTAGCAAACATTGGCTACATGTCCATGGGTTTTTCCTTGGGGAATGCCAAATTCGCCCCATATAGTGTTCAAGGGAATGATAGCCAACAGATAGATGAAAACACTGACGAAGAGTTAGGTCTAGAGGTTATTGCTGACAAAAATTTGCAGGCTCACAAAGAATGTGAAGTACTAGTTTCTGAACCAGCAGAAGAGGATATAGCCAGCAACCTGGAGGAGAAGTCGGGAAAAAGATCTAGAAGCTCAATGGAGGTCCGGAAGAACAAGAGACATGTTAAATCTATGAAGAAACCAAAATCTGCTTTTGTAAGCAACACTGAAGAGGATAGAAGTCATGATCTTCAGGGGCAGAGCTTGAGCAATTGCCGCTCAGATAATGATGACCCCAATGCTTCTCAGGAGCTAAATGGAGGAGGGTGTTCAAGCTTGAGTCCAAAGGATTCTACAACTTTGAAGTTAAAGGGCAAGTCAAGATCTAATAGAGGTTCTGCTACTGATCCACAGAGCGTCTATGCAAGAAGAAGAAGAGAAAGAATAAATGAAAGGTTGAAAATCCTACAAAACTTAGTCCCCAATGGAACCAAGGTAGATATCAGCACCATGCTTGAGGAAGCTGTCATATATGTGAAGTTTTTACAGCTCCAAATCAAGCTTCTGAGCTCTGATGATCTCTGGATGTACGCTCCCATTGCTTACAATGGAATGAACATTGGACTAGACCTCAATATTACCCCAACCAAACAGCCATAA 1089 0.4096 MDPAEQISEEWSSLSGLYTAEEADFMSQFLSNSSIPENLYGNFNLGIPSALWPGHESTIVSVTGSNNSSYFPANADNSNTIFIPFSQGSSFTADDSSNIFPTTSGENCFLNDSVANIGYMSMGFSLGNAKFAPYSVQGNDSQQIDENTDEELGLEVIADKNLQAHKECEVLVSEPAEEDIASNLEEKSGKRSRSSMEVRKNKRHVKSMKKPKSAFVSNTEEDRSHDLQGQSLSNCRSDNDDPNASQELNGGGCSSLSPKDSTTLKLKGKSRSNRGSATDPQSVYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVIYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNITPTKQP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3348g00053 362 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 92 349 - -
Gabi3348g00053 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 325 IPR011598 GO:0046983
Gabi3348g00053 362 MobiDBLite consensus disorder prediction 196 210 - -
Gabi3348g00053 362 SMART finulus 282 331 IPR011598 GO:0046983
Gabi3348g00053 362 MobiDBLite consensus disorder prediction 179 288 - -
Gabi3348g00053 362 CDD bHLH_AtIND_like 277 339 - -
Gabi3348g00053 362 MobiDBLite consensus disorder prediction 228 280 - -
Gabi3348g00053 362 MobiDBLite consensus disorder prediction 180 195 - -
Gabi3348g00053 362 Pfam Helix-loop-helix DNA-binding domain 286 326 IPR011598 GO:0046983
Gabi3348g00053 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 341 IPR036638 GO:0046983
Gabi3348g00053 362 Gene3D - 275 333 IPR036638 GO:0046983
Gabi3348g00053 362 FunFam Basic helix-loop-helix transcription factor 277 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3348g00053 Gabi-Chr3348 396170 397730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3348g00053 10 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 38.342 6.55e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3348g00053 HLH 2.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3348g00053 - - gmx:100817334 549.666