Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3348g00052 ATGGAACCAGCTCAGTTGATTTCTGAACAATGGGGTTCTCTTAGTGGTTTGTACACAGCTGAGGAAGCTGACTTTATGGCTCAGTTGCTTTGTGGTAACTATTCTGTCACAGAGAAGCACTGCGCAAATACCAGTTTTGGCATGCCATATGCCTTTGTGCCCGGCCATGAATCAACAATAGTGACCATGACAGGCACCAATAGCAATTCATATTTTCCTTCAAATGTTGCAAATACTAATTTTTCCTGTTTCTCCCAAGGGAATAGCTCCAGCATTGATGGTGGTAATTTCTTTTCCACTACAAGTAGTGGAACCTACTCCTGTGATCCGGCAACAAACTTTGACTCCGAGTCCATGGTGTTTTGCTTTGGAGATGTCAAATTTAGTTCAGATAGTTTTCAACGGAATGACAACTTAAACCAACATATCAATGAAAGCATTGATGAAGAGGAGTATAAAATGATTGTTTCTGAACATGCAGAAGAGGGTATAAGCAGAAACTTGGAGAACCCTGCAAAAAGATTTAGGAGCTCAATAGAGTTCTCAAAAAACATGAGGAATGTACAATCGAGGAAGAATCCAAACTCTGCTTCTATGAGCAACAATGAAGATGATAAAAGCGCTGGCCTCCAAATGCATGGTTCCAGCAGCATCTTTTCAGAGGGTGAGACTAATGATTCTATGGAGCTAAATGGAAGGGCATCTTCAAGTCTGAGCCCAAAAGATCCTGCAAAACCAAGAGCTACCAGCATTCCTGCCACTGATCCACAGAGCCTTTATGCAAGAAAGAGAAGACAAAGAATAAATGAAAGGTTGAGAATACTGCAAAACCTTGTCCCCAACGGCACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTACAATACGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGACGATCTCTGGATGTATGCTCCCATTGCTTACAATGGAATAAACATTGGACTAGACCTCAGTATTTTTCCAACCAAAGGAGGATGA 1017 0.4159 MEPAQLISEQWGSLSGLYTAEEADFMAQLLCGNYSVTEKHCANTSFGMPYAFVPGHESTIVTMTGTNSNSYFPSNVANTNFSCFSQGNSSSIDGGNFFSTTSSGTYSCDPATNFDSESMVFCFGDVKFSSDSFQRNDNLNQHINESIDEEEYKMIVSEHAEEGISRNLENPAKRFRSSIEFSKNMRNVQSRKNPNSASMSNNEDDKSAGLQMHGSSSIFSEGETNDSMELNGRASSSLSPKDPAKPRATSIPATDPQSLYARKRRQRINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGINIGLDLSIFPTKGG 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3348g00052 338 SMART finulus 258 307 IPR011598 GO:0046983
Gabi3348g00052 338 CDD bHLH_AtIND_like 253 315 - -
Gabi3348g00052 338 FunFam Basic helix-loop-helix transcription factor 253 310 - -
Gabi3348g00052 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 257 317 IPR036638 GO:0046983
Gabi3348g00052 338 Gene3D - 256 310 IPR036638 GO:0046983
Gabi3348g00052 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983
Gabi3348g00052 338 MobiDBLite consensus disorder prediction 180 256 - -
Gabi3348g00052 338 MobiDBLite consensus disorder prediction 181 238 - -
Gabi3348g00052 338 Pfam Helix-loop-helix DNA-binding domain 262 302 IPR011598 GO:0046983
Gabi3348g00052 338 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 91 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3348g00052 Gabi-Chr3348 389631 391163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3348g00052 10 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 38.630 5.63e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3348g00052 HLH 8.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3348g00052 - - gmx:100816788 433.721