Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3348g00049 | ATGACAACTGTGCTGCCGGCGACGGCGGCGCCCGGACGAGAGCTGTCGAATCCTCCGTCGGACGGCATCTCCAACATGCGGTTCTCCAACCACAGCGATCATCTGCTGGTGTCCTCATGGGACAAGAGCGTGCGGTTATATGATGCGAGCGCAAATGTGCTGAGAGGAGAGTTTATGCACTCTGGCCCCGTCCTCGATTGCTGCTTCCACGATGATTCTTCTGGCTTCAGTGCTGCCGCTGACAATACTGTTAGGAGGCTCGTTTTCAGTTCTAATAAGGAAGATATTCTAGGAAGACATGATGCACCTGTTCGTTGTGTTGAGTACTCCTATGCCGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCCTGAAATGTTGGGACCCTAGAGGTGCAAGTGGGCAAGAGCGCACACTAGTTGGGACATATCCACAACCTGAGCGTGTTTATTCTCTCTCTCTGGTTGGACATCGTCTAGTTGTAGCAACAGCTGGAAGACATGTTAATGTTTATGATTTGAGGAACATGTCTCAACCTGAGCAACGAAGAGAATCCTCATTGAAATATCAAACAAGATGTGTGCGCTGTTACCCAAACGGAACAGGTTACGCACTTAGTTCTGTTGAAGGGCGGGTTGCAATGGAATTCTTTGACCTCTCTGAGGCTAGTCAAGCAAAAAAATATGCTTTTAAGTGTCACAGAAAATCAGAAGCCGGAAGGGACATCGTCTATCCTGTAAATGCAATTGCATTCCACCCCATATATGGCACGTTTGCCACGGGAGGGTGTGACGGGTATGTTAACGTATGGGACGGAAACAACAAGAAGAGGCTGTACCAGTACTCAAAATATCCAACTAGCGTTGCTGCACTCTCGTTTAGTAGAGATGGACGCCTCCTGGCTGTTGCATCAAGTTACACATTCGAAGATGGGCCTAAACCCCACGAACAAGATGCTATCTACGTTCGCAGTGTAAACGAGATTGAGGTTAAGCCGAAACCCAAAGTCTATACCAATACTCCAGCGTGA | 1032 | 0.4845 | MTTVLPATAAPGRELSNPPSDGISNMRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHSGPVLDCCFHDDSSGFSAAADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAVASSYTFEDGPKPHEQDAIYVRSVNEIEVKPKPKVYTNTPA | 343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3348g00049 | 343 | FunFam | Mitotic checkpoint protein bub3, putative | 8 | 336 | - | - | |
| Gabi3348g00049 | 343 | Pfam | WD domain, G-beta repeat | 97 | 129 | IPR001680 | GO:0005515 | |
| Gabi3348g00049 | 343 | Pfam | WD domain, G-beta repeat | 231 | 272 | IPR001680 | GO:0005515 | |
| Gabi3348g00049 | 343 | Pfam | WD domain, G-beta repeat | 21 | 48 | IPR001680 | GO:0005515 | |
| Gabi3348g00049 | 343 | SUPERFAMILY | WD40 repeat-like | 19 | 306 | IPR036322 | GO:0005515 | |
| Gabi3348g00049 | 343 | SMART | WD40_4 | 90 | 129 | IPR001680 | GO:0005515 | |
| Gabi3348g00049 | 343 | SMART | WD40_4 | 137 | 173 | IPR001680 | GO:0005515 | |
| Gabi3348g00049 | 343 | SMART | WD40_4 | 224 | 272 | IPR001680 | GO:0005515 | |
| Gabi3348g00049 | 343 | SMART | WD40_4 | 8 | 48 | IPR001680 | GO:0005515 | |
| Gabi3348g00049 | 343 | SMART | WD40_4 | 51 | 88 | IPR001680 | GO:0005515 | |
| Gabi3348g00049 | 343 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 97 | 129 | - | - | |
| Gabi3348g00049 | 343 | PANTHER | MRNA EXPORT FACTOR AND BUB3 | 14 | 329 | - | - | |
| Gabi3348g00049 | 343 | PRINTS | G protein beta WD-40 repeat signature | 116 | 130 | IPR020472 | - | |
| Gabi3348g00049 | 343 | PRINTS | G protein beta WD-40 repeat signature | 259 | 273 | IPR020472 | - | |
| Gabi3348g00049 | 343 | PRINTS | G protein beta WD-40 repeat signature | 35 | 49 | IPR020472 | - | |
| Gabi3348g00049 | 343 | Gene3D | - | 11 | 337 | IPR015943 | GO:0005515 | |
| Gabi3348g00049 | 343 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 97 | 129 | IPR001680 | GO:0005515 | |
| Gabi3348g00049 | 343 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 247 | 281 | IPR001680 | GO:0005515 | |
| Gabi3348g00049 | 343 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3348g00049 | Gabi-Chr3348 | 361669 | 365560 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3348g00049 | 79 | 312 | U-box Gene Family | AT2G33340 | 25.630 | 3.12e-07 | 50.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3348g00049 | K02180 | - | gmx:100808389 | 670.618 |