Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3348g00047 | ATGGCTTTGGAGGCTCTGAATTCTCCTACAGCAACCACCACTCCCTTCACTAGCTACAAACGAGAAGAAGAAGAAGAAGAGGAAGACCTTCAGTTCCGTGAGCCTTGGTCGAAGAGGAAGCGTTCAAAACGAGCCCGTCTCGATAACCCAACAACAGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCACACAGCGGCAACAACAACAACAACAACAACAACACCTCTCATCGTCAAACTCAATCATCATCTTCACAGCCACAGCCACAACAAGAAGCGCCGCCACCTATAAAGCTCACTCACAAGTGCACCGTGTGCGGCAAAGTCTTTCCCTCTTATCAAGCACTCGGTGGCCACAAGGCCAGCCACCGCAAGTCCTCATCGGAAAACCCCGCAGCCACCGCCAATACTGCTAGCGACAACGTATCCGCCTCCGCCGCCACCGGCGGGAGGATGCACGAGTGTTCCATCTGTCACAAGGCTTTCGCTACGGGTCAAGCCCTCGGTGGCCACAAGCGCTGCCACTACGAAGGCAACAACAACAGTAACAGCAACGTTAAAACCAACAACAGCAGTGGCGTGACATCATCTGAGGGAGGCGGCGCCTCCACCCACAGCCACCGCGGGTTTGACCTGAACCTTCCCGCACCGTTGACGGAATTCTGGCCTCCGGTGGGGTTCGGCGGCGGCGACTCCAATAAGAAGAAGAAGAAGGTTAACAACATAGCTGGAAGCGGTGAACAAGAGGTGGAAAGCCCTTTGCCAGTAACCGCCAAGAGGCCGCGTTTGTTTTCGGGTGAAGATGGTGATGAAACGATGTAG | 828 | 0.5471 | MALEALNSPTATTTPFTSYKREEEEEEEDLQFREPWSKRKRSKRARLDNPTTEEEYLALCLIMLAHSGNNNNNNNNTSHRQTQSSSSQPQPQQEAPPPIKLTHKCTVCGKVFPSYQALGGHKASHRKSSSENPAATANTASDNVSASAATGGRMHECSICHKAFATGQALGGHKRCHYEGNNNSNSNVKTNNSSGVTSSEGGGASTHSHRGFDLNLPAPLTEFWPPVGFGGGDSNKKKKKVNNIAGSGEQEVESPLPVTAKRPRLFSGEDGDETM | 275 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3348g00047 | 275 | MobiDBLite | consensus disorder prediction | 228 | 275 | - | - | |
| Gabi3348g00047 | 275 | MobiDBLite | consensus disorder prediction | 119 | 141 | - | - | |
| Gabi3348g00047 | 275 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Gabi3348g00047 | 275 | Gene3D | Classic Zinc Finger | 100 | 177 | - | - | |
| Gabi3348g00047 | 275 | MobiDBLite | consensus disorder prediction | 68 | 100 | - | - | |
| Gabi3348g00047 | 275 | Pfam | C2H2-type zinc finger | 103 | 127 | - | - | |
| Gabi3348g00047 | 275 | Pfam | C2H2-type zinc finger | 155 | 178 | - | - | |
| Gabi3348g00047 | 275 | SMART | c2h2final6 | 155 | 177 | IPR013087 | - | |
| Gabi3348g00047 | 275 | SMART | c2h2final6 | 103 | 125 | IPR013087 | - | |
| Gabi3348g00047 | 275 | MobiDBLite | consensus disorder prediction | 181 | 212 | - | - | |
| Gabi3348g00047 | 275 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
| Gabi3348g00047 | 275 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 105 | 125 | IPR013087 | - | |
| Gabi3348g00047 | 275 | SUPERFAMILY | beta-beta-alpha zinc fingers | 103 | 177 | IPR036236 | - | |
| Gabi3348g00047 | 275 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 157 | 177 | IPR013087 | - | |
| Gabi3348g00047 | 275 | MobiDBLite | consensus disorder prediction | 181 | 205 | - | - | |
| Gabi3348g00047 | 275 | MobiDBLite | consensus disorder prediction | 68 | 90 | - | - | |
| Gabi3348g00047 | 275 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 37 | 218 | IPR044653 | GO:0003700 | |
| Gabi3348g00047 | 275 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 155 | 182 | IPR013087 | - | |
| Gabi3348g00047 | 275 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 103 | 130 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3348g00047 | Gabi-Chr3348 | 346241 | 347614 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3348g00047 | 1 | 265 | C2H2 Transcription Factor Family | AT1G27730 | 42.599 | 3.42e-51 | 166 |
Transcription factors information