Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3348g00045 ATGCCTAACTCACTTTCCTTCCTCCATATAAATCTTGCATACACATTGTTTCTGGTTGATTCATCTAAATTAAGATTTTTTGTGGGGAAGTGTGAGTTCAAATATTTATTAAGGTGTGTTGGATCAATTAAAGAAGAAGAAAAAAGGATGAGTTGCAACGGTTGTCGTGTCCTCCGAAAGGGTTGCAGCGACGACTGCATGCTACGACATTGCTTACTATGGATAGAGAACCCACAAGCACAGGCATACGCCACCATCTTCGTCGCCAAGTTCTACGGCCGTGCCACCCTCATGTCTTTCCTTTCCTCCGTACCCACCAACCAAAGATCTGCTTTGTTTCAGTCACTTCTATATGAAGCTGTGGGGCGTACTATTAATCCAGTGAATGGAGCTGTGGGTCTGCTGTGGACTGGGAACTGGCACCTTTGCCAATTGGGGGTCCAGAAAGTGCTACGAGGTGGTGGCGCGTTGACACCTCTGCCTCAGTTTTTGGGTGTAGATAACAGTGATGAGGGGTTTGAATCCTTTGTGGATGGTTCTAGTGATCAGCAAGTAATGGTACAGAGTAAGGTTGGTTTCGATGACGTCAAGAACTATGAAGCACAACAACCGGAGAGAGTGGTCGTTGGCGGTGGAAGGTGTCAGTGTCACCAAACAATTACAAAGAAGCAACGTGCGGGAACACCGTCCGAGGAATCGGAGATGTCGACGTTGGGAAGTAGAGCAGAGGGTTGTGCTTCTCAAAGTGAAAAGAAGCTCCTGACACTATTCTTCTGA 777 0.4672 MPNSLSFLHINLAYTLFLVDSSKLRFFVGKCEFKYLLRCVGSIKEEEKRMSCNGCRVLRKGCSDDCMLRHCLLWIENPQAQAYATIFVAKFYGRATLMSFLSSVPTNQRSALFQSLLYEAVGRTINPVNGAVGLLWTGNWHLCQLGVQKVLRGGGALTPLPQFLGVDNSDEGFESFVDGSSDQQVMVQSKVGFDDVKNYEAQQPERVVVGGGRCQCHQTITKKQRAGTPSEESEMSTLGSRAEGCASQSEKKLLTLFF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3348g00045 258 Pfam Lateral organ boundaries (LOB) domain 51 148 IPR004883 -
Gabi3348g00045 258 ProSiteProfiles LOB domain profile. 50 156 IPR004883 -
Gabi3348g00045 258 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 50 256 - -
Gabi3348g00045 258 MobiDBLite consensus disorder prediction 222 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3348g00045 Gabi-Chr3348 310686 312255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3348g00045 50 183 AS2 family AT3G49940 64.925 2.30e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi3348g00045 LOB 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3348g00045 - - lja:Lj5g3v2099760.1 296.975