Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3348g00043 ATGGGACACTCCAACGTTTGGAACGCTCATCCTAAGAACTATGGTCCTGGTTCTCGCACTTGCCGTGTGTGTGGGAACCCACATGGATTGATTAGGAAGTACGGTCTTATGTGCTGCAGGCAGTGCTTCCGTAGCAATGCCAAGGAAATTGGCTTCATTAAGTATCGCTAA 171 0.4854 MGHSNVWNAHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3348g00043 56 Gene3D 30s Ribosomal Protein S14; Chain N 1 56 IPR043140 -
Gabi3348g00043 56 Pfam Ribosomal protein S14p/S29e 7 56 IPR001209 GO:0003735|GO:0005840|GO:0006412
Gabi3348g00043 56 PANTHER 40S RIBOSOMAL PROTEIN S29 1 56 IPR039744 GO:0003735|GO:0008270
Gabi3348g00043 56 FunFam 40S ribosomal protein S29 1 56 - -
Gabi3348g00043 56 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 14 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3348g00043 Gabi-Chr3348 291683 293087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3348g00043 1 56 Cytoplasmic Ribosomal Protein Gene Family AT4G33865 91.071 2.72e-34 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3348g00043 K02980 - csv:101220987 130.183