Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3348g00037 ATGGGTGATGCATTACATGAAGTGCAACGCAGGGGTGGTGGTGCACTTGTTGTTTCTCCTAAGAGTGACATTGCATTGTTTGAAGGGGACAGAGATTTTGAGCCACACAATGGCATTGAATTTGAATCTCATGGAGCAGCATATTCATTTTATCAGGATTATGCCAAATCTATGGGATTCACCACTTCGATCAAAAACAGTAGACGCTCAAAGAAAACAAAAGAATTTATCGATGCCAAATTTGCATGCTCTAGGTATGGGGTTACACCTGAGTCTGACAGTGGGAGCAGTCGAAGACCAAGTGTAAAGAAGACAGATTGCAAAGCTTGCATGCATGTGAAGAGAAGGCCGGATGGAAAGTGGATCATTCATGAATTTATAAAGGAACATAATCATGAACTTTTACCAGCTCTGGCATATCATTTTCGGATTCATAGAAATGTGAAATTAGCTGAAAAGAATAACATTGACATCCTGCATGCTGTCAGTGAACGCACCAGAAAGATGTATGTTGAAATGTCTAGGCAATCTGGTGGCTGTCAAAACATTGCGTCTATCTTGGGTGATGTAAATTATCAGTTTGACAGAGGCCAGTATTTGGCTTTGGATGAGGGAGATGCCCAAGTTATGCTTGAGTATTTTAAGCACATTCAAAAAGAGAATCCCAACTTCTTCTATTCTATAGATTTAAATGAAGAGCAACGTTTAAGAAATCTATTTTGGGTTGATGCAAAAAGTATCAATGATTATCTCAGTTTTAATGATGTTGTTTCATTTGATACCACTTACATAAAAAGCAACGATAAGTTGCCGTTTGCTCCTTTTGTTGGAGTGAACCATCATTCTCAACCTATATTGCTTGGATGTGCATTGCTTGCGGATGAGACTAAACCAACATTTGTTTGGTTAATGAAGACATGGCTTAGAGCGATGGGTGGGCAAGCTCCCAAAGTTATAATCACCGATCAAGACAAGTCCTTGAAGGCAGCAATTGAAGAAGTCTTGCCAAATGTACGACATTGCTTTTCTCTTTGGCACGTACTGGAAAGGATATCTGAAAATCTGTCTTTTGTGATCAAACAGTATAAGAATTTCTTGCCAAAGTTTCACAAGTGCATTTTTAAGTCATGTACAGATGAGCAGTTTGACATGAGATGGTGGAAAATGGTCCCTAGATTTGACCTCCAAGATGATATATGGTTTCAATCATTGTTTGAAGACCGGAAAAAGTGGGTGCCAACTTACATGGGGGATACCTTTTTAGCTGGAATGTCTACACCTCAACGTTCTGAAAGTATTAACTCTTTCTTTGACAAATATATTCATAAGAAAATCACCCTTAAAGAGTTTGTGAAACAATATGGGATAATTCTTCAGAATAGGTATGATGAGGAAGCCATTGCAGATTTTGATACATTACACAAACAGCCAGCTCTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAGTTTATACTCATGCAATATTTAAGAAATTCCAAGTTGAAGTTTTGGGTGTAGCTGGTTGTCAATCTAGGGTAGAGTTTGGAGATGGAACTATTTCAAAATTTATAGTTCAAGATTACGAGAAGGATGAAGATTTTTTGGTAACTTGGAATGAGTTGAGCTCAGAGGTCTCTTGCTTCTGTCGATTGTTTGAATATAAAGGTTTCCTTTGCAGACATGCATTGAGCGTTCTCCAACGTTGTGGTTGTTCAAGTGTTCCATCTCATTATATCATGAAGAGGTGGACCAAAGATGCCAAAAGTCGGGAATCCATGGCAGACAGGACAAGAAGGATACAAACTAGGGTTCAACGATATAATGACTTATGTAAAAGAGCTATTGATTTGAGTGAAGAAGGGTCATTATCTGAAGAGAGTTACAATGTTGTTTTTCGTGCAATTGTTGATTCCCTGAAGAACTGTGTACATGTGAATAACTCTAACAACAATTGTGCAGAAACTAGTAACAATGCTTATGGCCTTAGGGAAGCAGAAGAAAATCGGGGTACCCTTGCTTTGAAACCAAGTAAGAAGAGGAACACACCTCGGAAAAGAAAGGTGCAATTAGAGCAGGATGTTATACTTGTTGATACTCAAGATAGCCTGCAGCAAATGGATAATCTTAGCTCGGATGCAATAACCCTTAATGGATATTATGGTACCCAGCAGAATGTGCAAGGACTGGTACAGTTGAACTTAATGGAGCCACCTCATGATGGTTACTATGTTAATCAACAGAGCATGCAAGGCCTGGGTCCATTGAATTCTATGGCTCCAAGCCATGATGGGTTTTTTGGAACACAGCATAGCATTCCTGGGCTGGGCCGGGAATTGGAATTTCGTCCAGCAACTACTTTTGGATATAGCCTTCAGGATGAGCCCGATCCCCATTTTCATGGCAACAGTTCAAGAAATACTTAA 2430 0.3926 MGDALHEVQRRGGGALVVSPKSDIALFEGDRDFEPHNGIEFESHGAAYSFYQDYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKRRPDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSRQSGGCQNIASILGDVNYQFDRGQYLALDEGDAQVMLEYFKHIQKENPNFFYSIDLNEEQRLRNLFWVDAKSINDYLSFNDVVSFDTTYIKSNDKLPFAPFVGVNHHSQPILLGCALLADETKPTFVWLMKTWLRAMGGQAPKVIITDQDKSLKAAIEEVLPNVRHCFSLWHVLERISENLSFVIKQYKNFLPKFHKCIFKSCTDEQFDMRWWKMVPRFDLQDDIWFQSLFEDRKKWVPTYMGDTFLAGMSTPQRSESINSFFDKYIHKKITLKEFVKQYGIILQNRYDEEAIADFDTLHKQPALKSPSPWEKQMSTVYTHAIFKKFQVEVLGVAGCQSRVEFGDGTISKFIVQDYEKDEDFLVTWNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYIMKRWTKDAKSRESMADRTRRIQTRVQRYNDLCKRAIDLSEEGSLSEESYNVVFRAIVDSLKNCVHVNNSNNNCAETSNNAYGLREAEENRGTLALKPSKKRNTPRKRKVQLEQDVILVDTQDSLQQMDNLSSDAITLNGYYGTQQNVQGLVQLNLMEPPHDGYYVNQQSMQGLGPLNSMAPSHDGFFGTQHSIPGLGRELEFRPATTFGYSLQDEPDPHFHGNSSRNT 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3348g00037 809 Pfam SWIM zinc finger 538 571 IPR007527 GO:0008270
Gabi3348g00037 809 ProSiteProfiles Zinc finger SWIM-type profile. 536 572 IPR007527 GO:0008270
Gabi3348g00037 809 Pfam MULE transposase domain 256 349 IPR018289 -
Gabi3348g00037 809 SMART 26again6 547 574 IPR006564 GO:0008270
Gabi3348g00037 809 Pfam FAR1 DNA-binding domain 49 136 IPR004330 -
Gabi3348g00037 809 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 28 645 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3348g00037 Gabi-Chr3348 260434 265054 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi3348g00037 MULE 6.9e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3348g00037 - - gmx:100805377 1466.44