Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3348g00017 ATGACTAGTCCAACTGGAAATTTAACAAGCCATAACGACCGTACCGCTGAGAAGATGGGAACTGAACAATGTGAATTTTCTGAAAAAACACCTCGGTTAGGCTCTAAATGTTTAGACAGCGAACATAGGGTGCTTGATACTGTGTTAACCAGATCTGTTACTGATGAAAAATCAAATCAAGTTTCTTCCAATTCGACTGAGAATTCGGTTATTCTACTGCCTGAACCACCTCAACATGACTTGGAAAAAACACCTCAGATAGGTTCTGAATGTTTAGACAGTGAAGAAAGGGTGCTTGGTACCGTGTCAACCAGTTCGGTTACTGATGAAATATCAAATGAAGCTCCTGCCTATGCCACTGAGAATTCTGTTATTCTACTGCCTGCACCACCTCAACATAACCTAGAAAAAACACCTCAGATAGGCTCTGAATGTTTAGACAGTGAAGAAAGGGTGATCGGTAACGTGTTAACCAGTTCTGTTACTGATGAAAAATCAAATCAAGTTTCTGCCACTGTGACTGAGAATTCTGTTATTCTATTGCCTGCACCACCTCAACATGACTTAGACTGTCAGACTGTAGAAGGTTCATGCCTTCTACAAAGTACCTTTGAACCAGTTTCTGTTTGTTTGCCTGATGATAAATCAGAAAACAAATGTCAGTCATTCTCTCGAAATGTTCAAAATGAACCCTTAGAAATAAGTGATACAGTAACTAGCTTTGTTGTTGAGGACCAAACGCAATCCATTCCTGCCCAAGTGAACATGAGTTCCGTCAATGAACTATTGGATCCAGCTTCAGGAGATGTTGGAAAAAATATTAGTTCCAACAATTCAGAAAGAAAGTCTAAAAGCACAACTCATATGCAATTGAAGCACAAGAGTAAAAGAAACTCGAAATTATTGAAGAAGTATATGCTAAGGTCGTTAGGAACCAGTGATAGAGCTTTGCGATCAAGGACAAGAGAAAAACCTAAAGCACCTGAACCAAATAGTAATTTAGTTGATGTTAATAATGATGGAGTGAAGAGGGAAAGTGGGAGGAAGAAGAAAAAGAGAAGAGGGGAGGGAATTACTGATCAATTTTCTAGAATCAGAGCTCAGTTAAGGTATTTATTGAACCGAGTAAGCTATGAGCAAAGCTTGATCGATGCTTATTCTGGTGAGGGCTGGAAAGGATACAGTATGGAAAAATTAAAGCCTGAAAAGGAGCTTCAACGGGCTAGGTCTGAAATACTTCGGCGTAAATTGAAAATCAGGGATTTATTTCAAAATTTGGATTCATTGTGTGCCGAAGGAAGGCTTCCTGATTCTTTGTTTGACTCTGAGGGAGAGATTGACAGTGAGGATATTTTCTGTGCAAAATGCCAGTCCAAAGAGTCGGGCACCAATAATGATATAATTCTCTGTGATGGTGCTTGTGATCGTGGATTTCACCAGCTCTGTTTGGATCCTCCATTGCTAACTGAAGACATTCCACCTGGCGATGAGGGTTGGCTATGCCCAGGATGTGATTGCAAAGATGACTGCATCGAACTCGTTAATGACTCCTTAGGAACAAGTCTCTCTCTTAGTGACACCTGGAAGAGGCTTTTTCCTGAAGCAGCTGCTGCTGCTAGAAACAATATTGATAACATGGGACTTCCTTCTGACGATTCGGATGATGATGATTATAATCCTAATGCTCCAGAAGATGTGGAGGTTGAAGGAGGTGAGCCAAGTTCTGATGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGATTCACGCCATGAGGATCAATACTTGGGCCTTCCTTCAGAAGATTCCGAGGATGATGATTTTGATCCTAATGGTCCAGATCCTGACAGTAGAGTCATGGATGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAAGATCTTGCTGCTGCAATTGAGGATAACATGTCCCCTGGAGGACAGGATGAAGATATCATATCTGCATCATTGGATGATATTAAGAACTTTAAAGGTTCTAGCGGACAAAAGTGTAAAGTTGGTAGGAAGCCATCTATAGTGGATGAACTGTCATCTTTACTAGAGCCAGATCCTGGCCAAGAGGGCTCCACTCCTGTTTCTGGGAAAAGACAAGTGGATAGGTTGGACTACAAAAAGCTGTATGACGAAACATACCAAAGTGATACTAGTGATGATGAAGATTGGACTGCCACTGCTAGTCCAAGTAGAAAAAGGACACTCACTGGTAAAGTGACTCCAGTGTCACCAAATGGAAATGCCTCAAATAATTCTGTACATACTCCTAGGAGGAATACCCATCAGAACAAAGTTGAAAATACAAACAATTCACCCCCTAAATCACTTGAAGGCCCTGGGAAATCTGGTTCCAGCGATAAAAAGCCTGGGTCTTCAGCATACAAAAGACTTGGAGAAGCTGTAGTTCAGAGACTTTACAAATCTTTTAAAGAAAATCAGTATCCAGATCGAACCACAAAAGAAAGCTTGGCACAAGAACTCGGACTCACTTATCAGCAGGTTACCAAATGGTTTGACAATACTCGTTGGAGCTTCCGGCATTCATCACAGAGGGAAACCGTTCCAGGTAGAAATGCTTCGCAGCAGGCCACAAACAGCATAGCTGAAAATAAGGGGGAGTGGGAATGGGAAGTAGTGTCCCAGGAGGTCAGTGGAGAAAAACCAAAAACCTCAAGCTCTGGAAAAAGAAAGCATTTGTCCGAACCCCAGGCATCTGAAGCAGGGCTGGTTGTTGATGACGCTGCAACGATGTCTCCTGCTTGCTCATCAAAAACTCATGAAATGCAAATAGGCAATAAAATAAAGACAAGGAAAAGGAAATAA 2841 0.415 MTSPTGNLTSHNDRTAEKMGTEQCEFSEKTPRLGSKCLDSEHRVLDTVLTRSVTDEKSNQVSSNSTENSVILLPEPPQHDLEKTPQIGSECLDSEERVLGTVSTSSVTDEISNEAPAYATENSVILLPAPPQHNLEKTPQIGSECLDSEERVIGNVLTSSVTDEKSNQVSATVTENSVILLPAPPQHDLDCQTVEGSCLLQSTFEPVSVCLPDDKSENKCQSFSRNVQNEPLEISDTVTSFVVEDQTQSIPAQVNMSSVNELLDPASGDVGKNISSNNSERKSKSTTHMQLKHKSKRNSKLLKKYMLRSLGTSDRALRSRTREKPKAPEPNSNLVDVNNDGVKRESGRKKKKRRGEGITDQFSRIRAQLRYLLNRVSYEQSLIDAYSGEGWKGYSMEKLKPEKELQRARSEILRRKLKIRDLFQNLDSLCAEGRLPDSLFDSEGEIDSEDIFCAKCQSKESGTNNDIILCDGACDRGFHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCIELVNDSLGTSLSLSDTWKRLFPEAAAAARNNIDNMGLPSDDSDDDDYNPNAPEDVEVEGGEPSSDESEYASASEKLEDSRHEDQYLGLPSEDSEDDDFDPNGPDPDSRVMDESSSSDFTSDSEDLAAAIEDNMSPGGQDEDIISASLDDIKNFKGSSGQKCKVGRKPSIVDELSSLLEPDPGQEGSTPVSGKRQVDRLDYKKLYDETYQSDTSDDEDWTATASPSRKRTLTGKVTPVSPNGNASNNSVHTPRRNTHQNKVENTNNSPPKSLEGPGKSGSSDKKPGSSAYKRLGEAVVQRLYKSFKENQYPDRTTKESLAQELGLTYQQVTKWFDNTRWSFRHSSQRETVPGRNASQQATNSIAENKGEWEWEVVSQEVSGEKPKTSSSGKRKHLSEPQASEAGLVVDDAATMSPACSSKTHEMQIGNKIKTRKRK 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3348g00017 946 MobiDBLite consensus disorder prediction 315 329 - -
Gabi3348g00017 946 SMART HOX_1 796 858 IPR001356 GO:0003677
Gabi3348g00017 946 MobiDBLite consensus disorder prediction 854 875 - -
Gabi3348g00017 946 MobiDBLite consensus disorder prediction 685 802 - -
Gabi3348g00017 946 MobiDBLite consensus disorder prediction 270 284 - -
Gabi3348g00017 946 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 509 IPR013083 -
Gabi3348g00017 946 MobiDBLite consensus disorder prediction 549 574 - -
Gabi3348g00017 946 MobiDBLite consensus disorder prediction 619 633 - -
Gabi3348g00017 946 FunFam Homeobox protein HAT3.1 433 511 - -
Gabi3348g00017 946 MobiDBLite consensus disorder prediction 1 33 - -
Gabi3348g00017 946 CDD PHD_PRHA_like 452 504 IPR045876 -
Gabi3348g00017 946 MobiDBLite consensus disorder prediction 705 720 - -
Gabi3348g00017 946 MobiDBLite consensus disorder prediction 312 357 - -
Gabi3348g00017 946 CDD homeodomain 808 855 IPR001356 GO:0003677
Gabi3348g00017 946 Gene3D - 798 862 - -
Gabi3348g00017 946 ProSitePatterns Zinc finger PHD-type signature. 453 504 IPR019786 -
Gabi3348g00017 946 MobiDBLite consensus disorder prediction 542 635 - -
Gabi3348g00017 946 MobiDBLite consensus disorder prediction 579 599 - -
Gabi3348g00017 946 Pfam Homeodomain 806 850 IPR001356 GO:0003677
Gabi3348g00017 946 MobiDBLite consensus disorder prediction 262 298 - -
Gabi3348g00017 946 Pfam PHD-finger 452 507 IPR019787 -
Gabi3348g00017 946 SUPERFAMILY FYVE/PHD zinc finger 442 510 IPR011011 -
Gabi3348g00017 946 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 178 896 - -
Gabi3348g00017 946 ProSiteProfiles Zinc finger PHD-type profile. 450 507 IPR019787 -
Gabi3348g00017 946 MobiDBLite consensus disorder prediction 725 784 - -
Gabi3348g00017 946 FunFam Homeobox protein HAT3.1 796 865 - -
Gabi3348g00017 946 SMART PHD_3 452 505 IPR001965 -
Gabi3348g00017 946 MobiDBLite consensus disorder prediction 854 946 - -
Gabi3348g00017 946 SUPERFAMILY Homeodomain-like 798 857 IPR009057 -
Gabi3348g00017 946 ProSiteProfiles 'Homeobox' domain profile. 808 854 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3348g00017 Gabi-Chr3348 116920 131305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3348g00017 310 851 Homeobox Transcription Factor Family AT3G19510 47.120 3.65e-129 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Gabi3348g00017 PHD 6.8e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3348g00017 - - aprc:113871869 1163.67