Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3342g00002 ATGGCCGAACCCCTTCTCTTCAGCGTCGCAGACTCGCTCATTATTAAGATTGCTTCTCGTGCTGTTCAAGGAGCTTCTTTGGTTCGGGGTGTGCACGAAGATCTGCTAGAGCTCAAAGAAACTGTGTCATTCATCAAAGCTGTGCTGTTGGATGCAGAGCAAAAGCAGCAACAGAACAATGAGTTGCGTGTGTGGCTCGGACAGATTAAGCGTGTTTTCTATGATGCCGAAGACCTAATCGATGATTATGAGTATGAATCATTACATAAGAAGGTGGTCAACGCTAACGGTAGCAACACAAGAAAGGTATGCTGGTTCTTCTCAACTTCAATTCCTCTTGTTTATCGTCTTAGAATGGCGAGTCAAATAAAAGATATCAAAAAAAGATTAGACATGGTTGCCGCTGATAGGCATAAGTTTGGCCTTCAAACCATTGAGAATGATACACGTGTTGTGCATAGGAGGGAAATGACTCACTCCCATGTTGATGCTTCAGATGTGATAGGAAGGGAACATGATAAAGATAAAATTTTAGAGCTTTTGTTACAACATGGTGAGGATAAAAGTCTCGCTGTTATCCCCATCGTGGGAATCGGAGGCTTGGGGAAGACTACACTTGCACAGTTGGTGTTTAATGATGAGAGAATAGATAAGTGTTTCCCTTTAAAGATGTGGGTGTGTGTGTCTCAACATTTTGAACTTGAGGATTTGCTTCGTAAAATTCTCAAGTCAGATGATACGGGTAGTAGTATTTCTGCTCCTACCCTAACTCACCTGGAGAGCTTTAAAAGTTGTGATGTGGAGCAACTACAACGTTTAGTAAGGAATAAACTTGCTGGTAAAAAGTTCTTGGTTGTCTTGGATGACGTATGGAACGCTGATCGTGCTAAATGGGTTGAGTTGAGGAATTTACTACAAGGAGGTGCTAAAGGAAGTAAAGTCCTTGTAACTACACGTGGCCACTCAATTGCTACCATGATGATGACCACTAATTCATATTACAATTTAGAAGTCCTTTCTCAAGATGATTCCTTGTCCCTATTTGTCAAATGGGCTTTTAAAGAAGGAGAAGAGGGGAGGTATCCAGAATTGTTGGAGATTGGGAAAGAAATCGTGAAAAAATGCGGTGGGCTTCCATTGGCAGTGAGAACATTAGGGAGTTCATTATTCTTGAAAGTTGATATGAAAGACTGGGAGTCTGTTAGAGACAATGAGATTTGGAATTTACCACAAAATGAAGGTGACATTCTGCCTGCTTTAAAATTTAGTTATGATCAACTACCTTCATATTTAAAACGATGTTTTGCTTGCTTCTCCCTTTTTCCAAAGGACTTTGTATTCTGCGATGCTCATGTTACTCGGCTTTGGGAGGCACATGGATTTCTTCCATCACCAAACAAGAACAAAACAGTGGATGATGTTGGCAATGAATTTTTGCATGAGCTACATTCAAGATCTTTTCTTCAAGGTTTTATTGACTATGGTCCTGGTTGTCAATTTAAATTACACGATTTGGTGCAAGATCTTGCATTGTTTGTTGCAAAGGATGAGTTTCAACTCATAAATTCCCGTAGTCAGAATATATTTGAGAACGCCCATCATTTGTCATTTGTCAAAAATGATTTGCCTGGTCAAACTTCCTTTCCAAGAGGTCTGAGAACCATATTTTTTCCTGTGGGAGCCAACAATGAAGCTTTCTTGAATACATTGGTGTCGAGGTGTAAATACTTGCGATTTTTGCAATTATCTAATTCTGAGTATGAGAGTTTGCCCCGCTCTATTGGTAAGTTGAAACATTTAAGATATCTCAGTGTTTCAAATAATCAAAAGCTGAAGAGTCTCCCTAATTCATTGAGCAATCTCCAAAATCTGCAAGCTTTGAACCTCCATGAATGCACAAAGCTACAAACACTGCCCAAAGGAATAGGAAACTTGATTAGCCTTCGAGTTTTGAGTATAAGCACAAAGCAATCTGATTTTCCGAACAAAGATATTGAAAAATTGACTTCTCTAGAAGTTTTAAGTTTAGCTTTTTGTGACAATTTGGAGTCATTGTTCGAAGGGATGCAACTTCCTAATCTTAAATGGCTTACTATTAAAACTTGTCGGAGTCTTAAGTCTTTGGCACTTTGTGCTACTCCAAACCTAGAGAATTTGTATATTATGAAGTGCGATAAGTTGGAATTGTCAAAGGACCTTGATAACCAAATTCTTGAGTTAAGGTTAAAATTACTGTACCTTAGTAATTTGCCACAGCTGGTGACTTGGCCTCAATGGCTTCAAAGATCTGCGGCCACATTACATTCCTTGAAGATTGATAACTGTGACAATCTGAAGGAGCTTCCCCAGCAGTTGTCAGCTTCGACTTGTCTCAAAATACTTTCAATTGGGAATTGTCCAAAGTTGCAATCACTCTCTAATGATATGCATCACTTCCCCAACCTTGAATATTTAGTAATTGAAAAATGTCCTGAACTATACAGAAGATACCAGCATGAAGTTGGACCGGATTGGCCCAAAATATCGCACATCAAAAGAGTTTACATTCATGAATTTGAGAAGAGGAATTCTCTGATAAAGAGGTCAAAAGTTTAA 2595 0.3904 MAEPLLFSVADSLIIKIASRAVQGASLVRGVHEDLLELKETVSFIKAVLLDAEQKQQQNNELRVWLGQIKRVFYDAEDLIDDYEYESLHKKVVNANGSNTRKVCWFFSTSIPLVYRLRMASQIKDIKKRLDMVAADRHKFGLQTIENDTRVVHRREMTHSHVDASDVIGREHDKDKILELLLQHGEDKSLAVIPIVGIGGLGKTTLAQLVFNDERIDKCFPLKMWVCVSQHFELEDLLRKILKSDDTGSSISAPTLTHLESFKSCDVEQLQRLVRNKLAGKKFLVVLDDVWNADRAKWVELRNLLQGGAKGSKVLVTTRGHSIATMMMTTNSYYNLEVLSQDDSLSLFVKWAFKEGEEGRYPELLEIGKEIVKKCGGLPLAVRTLGSSLFLKVDMKDWESVRDNEIWNLPQNEGDILPALKFSYDQLPSYLKRCFACFSLFPKDFVFCDAHVTRLWEAHGFLPSPNKNKTVDDVGNEFLHELHSRSFLQGFIDYGPGCQFKLHDLVQDLALFVAKDEFQLINSRSQNIFENAHHLSFVKNDLPGQTSFPRGLRTIFFPVGANNEAFLNTLVSRCKYLRFLQLSNSEYESLPRSIGKLKHLRYLSVSNNQKLKSLPNSLSNLQNLQALNLHECTKLQTLPKGIGNLISLRVLSISTKQSDFPNKDIEKLTSLEVLSLAFCDNLESLFEGMQLPNLKWLTIKTCRSLKSLALCATPNLENLYIMKCDKLELSKDLDNQILELRLKLLYLSNLPQLVTWPQWLQRSAATLHSLKIDNCDNLKELPQQLSASTCLKILSIGNCPKLQSLSNDMHHFPNLEYLVIEKCPELYRRYQHEVGPDWPKISHIKRVYIHEFEKRNSLIKRSKV 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3342g00002 864 Gene3D - 148 334 IPR027417 -
Gabi3342g00002 864 Gene3D Ribonuclease Inhibitor 525 857 IPR032675 -
Gabi3342g00002 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 437 IPR027417 -
Gabi3342g00002 864 PRINTS Disease resistance protein signature 277 291 - -
Gabi3342g00002 864 PRINTS Disease resistance protein signature 192 207 - -
Gabi3342g00002 864 PRINTS Disease resistance protein signature 619 635 - -
Gabi3342g00002 864 PRINTS Disease resistance protein signature 375 389 - -
Gabi3342g00002 864 PANTHER DISEASE RESISTANCE PROTEIN RP 38 820 IPR044974 GO:0006952
Gabi3342g00002 864 SUPERFAMILY L domain-like 501 826 - -
Gabi3342g00002 864 FunFam Probable disease resistance protein At1g61300 149 332 - -
Gabi3342g00002 864 Pfam NB-ARC domain 170 425 IPR002182 GO:0043531
Gabi3342g00002 864 CDD RX-CC_like 8 131 IPR038005 -
Gabi3342g00002 864 Gene3D - 338 428 IPR042197 -
Gabi3342g00002 864 Gene3D - 10 124 - -
Gabi3342g00002 864 Pfam Rx N-terminal domain 12 98 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3342g00002 Gabi-Chr3342 22627 27656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3342g00002 193 826 WRKY Transcription Factor Family AT5G45050 24.638 3.51e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3342g00002 - - gmx:100780033 993.801